Protein Alignment Ref2 and Alyref

DIOPT Version :10

• Sequence 1: NP_609574.1
• Gene: Ref2 / 34667
• FlyBaseID: FBgn0032439
• Length: 220
• Species: Drosophila melanogaster
• Sequence 2: NP_001381323.1
• Gene: Alyref / 690585
• RGDID: 1594679
• Length: 256
• Species: Rattus norvegicus
• Alignment Length: 232
• Identity: 74/232 - (31%)
• Similarity: 115/232 - (49%)
• Gaps: 45/232 - (19%)

  Fly     1 MSDKMKMSLDDIIKMKFNKNK---------FVNAKNERVQGGSIR--KRNSEGGLRGIQRSR--- 51
            |:|||.||||||||:  |:::         ...|.::..:||:::  .|.:.||  |..|:|
  Rat     1 MADKMDMSLDDIIKL--NRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGG--GPMRNRPAI 61

  Fly    52 -----NGTGFIRKSKFKQETLLKPPKKPTL----------------VMVCNLDYGVDDDDIMELF 95
                 .|.|..|.:.:.:...|....:..|                ::|.|||:||.|.||.|||
  Rat    62 ARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELF 126

  Fly    96 NQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQFHGVRLDGRRLKLHLVQNTRNFKRTD 160
            .:.|.::|..|||||.|.|||||.:.|:.:.:|.:.::|::||.||||.:.:.||.:..:.:|..
  Rat   127 AEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRRP 191

  Fly   161 VDDLSLRMGSFKTRFLQNGTF---KTRSLQNGFQKSR 194
            ..  |:..|.. ||...:|:|   .||....|..:.|
  Rat   192 AQ--SINRGGM-TRNRGSGSFGGGGTRRGTRGGSRGR 225

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref2	NP_609574.1	RRM_SF	75..149	CDD:473069	35/89 (39%)
Alyref	NP_001381323.1	RRM_THOC4	107..180	CDD:410081	34/72 (47%)