DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref2 and Myef2

DIOPT Version :10

Sequence 1:NP_609574.1 Gene:Ref2 / 34667 FlyBaseID:FBgn0032439 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001013223.2 Gene:Myef2 / 679712 RGDID:1306547 Length:591 Species:Rattus norvegicus


Alignment Length:194 Identity:44/194 - (22%)
Similarity:75/194 - (38%) Gaps:38/194 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 MKFNKNKFVNAKNERVQGGSIRKR--------NSEGGLRGIQRSRNGTGF--------------- 56
            ::|...:||....|.:....:..|        :.|...|.:||:  ||.|               
  Rat   137 VEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRALQRT--GTSFQGSHASDVGSGLVNL 199

  Fly    57 ----IRKSKFKQETL--LKPPKKPTLVMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSL 115
                :.......|.:  |:..:..:.:.|.|||:.|....:.|:|:..|.|::..:..|:||.|.
  Rat   200 PPSIVNNPNIPPEVINNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSR 264

  Fly   116 GTAHLSFKYREEAFQIIEQFHGVRLDGRRLKLHLVQNTRNFKRTDVDDLSLRMGSFKTRFLQNG 179
            |...::|:...||.|.|..|:|..|..|  .:|:..:.::....|     .|....||..|..|
  Rat   265 GMGTVTFEQAIEAVQAISMFNGQFLFDR--PMHVKMDDKSVPHED-----YRSHDSKTSQLPRG 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref2NP_609574.1 RRM_SF 75..149 CDD:473069 23/73 (32%)
Myef2NP_001013223.2 RRM1_MYEF2 92..167 CDD:410059 5/29 (17%)
PABP-1234 115..>587 CDD:130689 44/194 (23%)
RRM2_MYEF2 224..299 CDD:410061 24/76 (32%)
RRM3_MYEF2 515..591 CDD:410063
Blue background indicates that the domain is not in the aligned region.

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