Protein Alignment Ref2 and alyref

DIOPT Version :9

• Sequence 1: NP_001246007.1
• Gene: Ref2 / 34667
• FlyBaseID: FBgn0032439
• Length: 220
• Species: Drosophila melanogaster
• Sequence 2: NP_001098578.1
• Gene: alyref / 560127
• ZFINID: ZDB-GENE-070928-29
• Length: 280
• Species: Danio rerio
• Alignment Length: 264
• Identity: 72/264 - (27%)
• Similarity: 106/264 - (40%)
• Gaps: 88/264 - (33%)

  Fly     1 MSDKMKMSLDDIIKMKFNKNKFVNAKNERVQGGSIRKRNSEGGLRGI--------------QRSR 51
            |:|||.||||||||.          ..:|..||....|...|| ||.              :...
Zfish     1 MADKMDMSLDDIIKQ----------NRQRGGGGGRGGRGGRGG-RGATTGGGRGGGGGASGRLGN 54

  Fly    52 NGTGF---------------IRKSKFKQETLLKPPKKPT-------------------------- 75
            .|.||               :.:.:.:.....:|.:.|.
Zfish    55 TGGGFGGRGGGSGPMRNRQNLSRGRSRPAPYSRPKQLPDKWQHDLFDNGYSSNAGGGGGGGGGGA 119

  Fly    76 ------LVMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQ 134
                  .::|.|||:||.|.||.|||.:.|.::|..|||||.|.|||||.:.|:.:.:|.:.::|
Zfish   120 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 184

  Fly   135 FHGVRLDGRRLKLHLVQNTRNF-KRTDVDDLSL--------RMGSFKTRFLQNGTFKTRSLQNGF 190
            ::||.||||.:.:.||.:..:. :||.:..|:.        |:|.|       |..|.|..:.|.
Zfish   185 YNGVPLDGRPMNIQLVTSQIDAQRRTPMQGLNRGGGGMNRNRVGGF-------GMQKGRGGRGGG 242

  Fly   191 QKSR 194
            .:.|
Zfish   243 SRGR 246

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref2	NP_001246007.1	RRM	2..>198	CDD:223796	71/263 (27%)
		RRM_SF	75..149	CDD:302621	34/105 (32%)
alyref	NP_001098578.1	RRM	<126..>226	CDD:223796	39/99 (39%)
		RRM_THOC4	126..199	CDD:241124	34/72 (47%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0533
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1369069at2759
OrthoFinder	1	1.000	-	-		FOG0001223
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_101458
Panther	1	1.100	-	-	O	PTHR19965
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	7	6.780