Protein Alignment Ref2 and hnrnpabb

DIOPT Version :10

• Sequence 1: NP_609574.1
• Gene: Ref2 / 34667
• FlyBaseID: FBgn0032439
• Length: 220
• Species: Drosophila melanogaster
• Sequence 2: NP_998467.1
• Gene: hnrnpabb / 406594
• ZFINID: ZDB-GENE-040426-2516
• Length: 309
• Species: Danio rerio
• Alignment Length: 225
• Identity: 47/225 - (20%)
• Similarity: 78/225 - (34%)
• Gaps: 49/225 - (21%)

  Fly     1 MSDKMKMSLDDIIKMKFNKNKFVNAKNERVQGGSIRKRNSEGGLRGIQRSRNGTGFIRKSKFKQE 65
            |:|:..|...:            |...|.:.||.....|..|  .|:|        |..||.:::
Zfish     1 MADEQFMETSE------------NGNEENLNGGEAAGENGAG--EGLQ--------IDASKCEED 43

  Fly    66 TLLKPPKKPTLVMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRD-GNSLGTAHLSFKYREEAF 129
            .        ..:.|..|.:.....|:.:.|::.|.|....:..|.: |.|.|...:.||..:...
Zfish    44 A--------GKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVD 100

  Fly   130 QIIEQFHGVRLDGRRL--KLHLVQNTRNFKRTDVDDLSLRMGSFKTR--FLQNGTFKTRSLQNGF 190
            ::::|... |||||::  |..:.......|:..|..|:......|.|  |...|..:|..|..
Zfish   101 RVLQQKEH-RLDGRQIDPKRAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSFGEIETIELPT-- 162

  Fly   191 QKSRLFRNSSFKPRPFKKHNFKSRAFDTDF 220
                       .|:..|:..|....|..:|
Zfish   163 -----------DPKTSKRRGFVFITFKEEF 181

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref2	NP_609574.1	RRM_SF	75..149	CDD:473069	19/76 (25%)
hnrnpabb	NP_998467.1	CBFNT	2..45	CDD:311868	13/72 (18%)
		RRM1_hnRNPAB	41..120	CDD:410151	19/87 (22%)
		RRM_SF	125..204	CDD:473069	14/70 (20%)