Protein Alignment Ref2 and Rbm39

DIOPT Version :10

• Sequence 1: NP_609574.1
• Gene: Ref2 / 34667
• FlyBaseID: FBgn0032439
• Length: 220
• Species: Drosophila melanogaster
• Sequence 2: XP_006235393.1
• Gene: Rbm39 / 362251
• RGDID: 1310071
• Length: 530
• Species: Rattus norvegicus
• Alignment Length: 146
• Identity: 31/146 - (21%)
• Similarity: 55/146 - (37%)
• Gaps: 33/146 - (22%)

  Fly    30 VQGGSIRKRNSEGGLRGIQRSRNGTGFIRKSKFKQETLLKPPKKPTLVMVCNLDYGVDDDDIMEL 94
            ||.....|..:......:|:...|                    |..:.|.:|.:.:.:|.:..:
  Rat   225 VQASQAEKNRAAAMANNLQKGSAG--------------------PMRLYVGSLHFNITEDMLRGI 269

  Fly    95 FNQDGVVEKGFVHYDRD-GNSLGTAHLSFKYREEAFQIIEQFHGVRLDGRRLKL-HLVQNT---- 153
            |...|.:|...:..|.: |.|.|...::|...|.|.:.:||.:|..|.||.:|: |:.:.|
  Rat   270 FEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS 334

  Fly   154 -------RNFKRTDVD 162
                   ...:||.:|
  Rat   335 ASSFLDSDELERTGID 350

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref2	NP_609574.1	RRM_SF	75..149	CDD:473069	20/75 (27%)
Rbm39	XP_006235393.1	SF-CC1	46..518	CDD:273721	31/146 (21%)