Protein Alignment Ref2 and CG18259

DIOPT Version :9

• Sequence 1: NP_001246007.1
• Gene: Ref2 / 34667
• FlyBaseID: FBgn0032439
• Length: 220
• Species: Drosophila melanogaster
• Sequence 2: NP_573324.1
• Gene: CG18259 / 32866
• FlyBaseID: FBgn0030956
• Length: 474
• Species: Drosophila melanogaster
• Alignment Length: 181
• Identity: 42/181 - (23%)
• Similarity: 70/181 - (38%)
• Gaps: 35/181 - (19%)

  Fly    22 FVNAKNERVQGG---SIRKRNSEGGLRGIQRSRNGTGFIRKSKFKQETLLKPPKKPTL------- 76
            ||..::..:..|   :..:|.:.|| .|.:.|.:||.....:....:...:.|...:|
  Fly   301 FVGKRDPHISHGIYANENRRKAVGG-GGARDSDSGTDSDGDAAAPSKNKRRSPSPLSLRTSNTKD 364

  Fly    77 ---VMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQFHGV 138
               ::|.||...|...||.|||:..|.|      ||......|||.:.:|..|.|.:.::.:|..
  Fly   365 GYRLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRPGTAEVIYKSLEHAEKAVDTYHHR 423

  Fly   139 RLDGR------------RLKLHLVQN---TRNFKRTDVDDLSLRMGSFKTR 174
            :.|.:            |..:|...:   |.|....:||..:|....|:.|
  Fly   424 QFDDQPMHCVLVNPHSSRRSVHKASSRTVTTNSSGVEVDIDALHSVLFRVR 474

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref2	NP_001246007.1	RRM	2..>198	CDD:223796	42/181 (23%)
		RRM_SF	75..149	CDD:302621	23/95 (24%)
CG18259	NP_573324.1	RRM	<345..>443	CDD:223796	24/103 (23%)
		RRM_SKAR	366..434	CDD:241125	21/73 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0533
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR19965
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.910