Protein Alignment Ref2 and SPBC106.12c

DIOPT Version :9

• Sequence 1: NP_001246007.1
• Gene: Ref2 / 34667
• FlyBaseID: FBgn0032439
• Length: 220
• Species: Drosophila melanogaster
• Sequence 2: NP_595161.1
• Gene: SPBC106.12c / 2540184
• PomBaseID: SPBC106.12c
• Length: 274
• Species: Schizosaccharomyces pombe
• Alignment Length: 232
• Identity: 56/232 - (24%)
• Similarity: 86/232 - (37%)
• Gaps: 63/232 - (27%)

  Fly     5 MKMSLDDIIKMKFNKNKFVNAKNERVQG---GSIRKRNSEGGLRGIQRSRNGTGFIRKSKFKQET 66
            ::.|||:||             |||..|   ...|:|.|:.  |..::||....|.|.||....:
pombe     3 LEKSLDEII-------------NERTNGFDHKHSRRRGSQN--RISKKSRLTYKFKRASKEHNSS 52

  Fly    67 LLKPPKKPTL------------------------VMVCNLDYGVDDDDIMELFNQDGVVEKGFVH 107
            ....|.:..|                        |.|.||.|.|.:.|::.||.....: :..::
pombe    53 PDDGPWQHDLDQEQDAHPRTTHLQKRQHSENRFGVRVENLHYQVLEKDVLSLFENFHPI-RVIMN 116

  Fly   108 YDRDGNSLGTAHLSFKYREEAFQIIEQFHGVRLDGRRLKLHLVQNTRNFKRTDVDDL--SLRMGS 170
            |||.|.|.|:..:.|:..::|....:......|.|..:::........|.|  :.|:  |.|..|
pombe   117 YDRAGRSEGSCDVYFETSQDAEDAQKTLQSTNLKGSEIQISKKSPPSLFDR--ISDMPHSARKPS 179

  Fly   171 FKTRFLQNGTFKTRSLQNGFQKS-----RLFRNSSFK 202
            ..:|           ...||.:|     |.||:||.|
pombe   180 RSSR-----------SNRGFNRSSKKDDRSFRSSSKK 205

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref2	NP_001246007.1	RRM	2..>198	CDD:223796	52/226 (23%)
		RRM_SF	75..149	CDD:302621	20/97 (21%)
SPBC106.12c	NP_595161.1	RRM	1..229	CDD:223796	56/232 (24%)
		RRM_Aly_REF_like	87..158	CDD:240864	19/71 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0533
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_101458
Panther	1	1.100	-	-	O	PTHR19965
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	5	4.770