Protein Alignment Ref2 and aly-3

DIOPT Version :10

• Sequence 1: NP_609574.1
• Gene: Ref2 / 34667
• FlyBaseID: FBgn0032439
• Length: 220
• Species: Drosophila melanogaster
• Sequence 2: NP_001076697.1
• Gene: aly-3 / 178157
• WormBaseID: WBGene00000122
• Length: 240
• Species: Caenorhabditis elegans
• Alignment Length: 212
• Identity: 55/212 - (25%)
• Similarity: 89/212 - (41%)
• Gaps: 45/212 - (21%)

  Fly     7 MSLDDIIKMKFNKNKFVNAKNERVQGGSIRKRNSEGGLRGIQRSRNGTGFIRKS----KFKQETL 67
            :||:|||            ...|...|||:|::..|..||..|.   ||..|:|    .:|....
 Worm     9 LSLEDII------------SKTRKTTGSIQKKSFGGARRGNTRP---TGLPRRSGGSGGWKDLDA 58

  Fly    68 LK--------PPKKPTLVMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKY 124
            ::        ...|...|.:.||...|...|:.|||. |..:....|:::..|:||||..:|...
 Worm    59 VQNHGISSRGNDSKVIRVNISNLAPTVISSDLEELFG-DYRLSSVSVNFNEHGDSLGTGDISLTK 122

  Fly   125 REEAFQIIEQFHGVRLDGRRLKLHLVQNTRNFKRTDVDDLSLRMGSFKTRFLQNGTFKTRSLQNG 189
            | :|.:::::|.||.|||:.:|..::.::....|.|..:.|.......:|..|:|.
 Worm   123 R-DAERLVQKFSGVALDGKIMKFAVIDSSNMAGRVDFGNRSRSSPGRSSRGFQSGP--------- 177

  Fly   190 FQKSRLFRNSSFKPRPF 206
                   |.::.||..|
 Worm   178 -------RRNNGKPEDF 187

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref2	NP_609574.1	RRM_SF	75..149	CDD:473069	25/73 (34%)
aly-3	NP_001076697.1	RRM_Aly_REF_like	74..146	CDD:409852	25/73 (34%)