DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref2 and Tra2b

DIOPT Version :10

Sequence 1:NP_609574.1 Gene:Ref2 / 34667 FlyBaseID:FBgn0032439 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_476460.1 Gene:Tra2b / 117259 RGDID:619886 Length:288 Species:Rattus norvegicus


Alignment Length:165 Identity:34/165 - (20%)
Similarity:68/165 - (41%) Gaps:36/165 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 VCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDG-NSLGTAHLSFKYREEAFQIIEQFHGVRLDG 142
            |..|.....:.|:.|:|::.|.:....:.||:.. .|.|.|.:.|:..::|.:..|:.:|:.|||
  Rat   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 186

  Fly   143 RRLKLHLVQNTR----------------NFKRTDVDDLSLRMGSFKTRFLQNGTFKTRSLQNG-- 189
            ||:::......|                :.:|.|..|.....|      ..:..:.:||.:.|  
  Rat   187 RRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRG------YDDRDYYSRSYRGGGG 245

  Fly   190 --------FQKSRLFRNSSFKPRP-FKKHNFKSRA 215
                    ..:.:::|..|  |.| :.:..::||:
  Rat   246 GGGGWRAAQDRDQIYRRRS--PSPYYSRGGYRSRS 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref2NP_609574.1 RRM_SF 75..149 CDD:473069 20/70 (29%)
Tra2bNP_476460.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..114
RRM_TRA2 117..196 CDD:409798 20/73 (27%)
Linker 193..230 5/42 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..225 4/28 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..288 7/39 (18%)
Blue background indicates that the domain is not in the aligned region.

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