DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref2 and rbm11

DIOPT Version :10

Sequence 1:NP_609574.1 Gene:Ref2 / 34667 FlyBaseID:FBgn0032439 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001373296.2 Gene:rbm11 / 100526814 ZFINID:ZDB-GENE-091204-317 Length:212 Species:Danio rerio


Alignment Length:124 Identity:36/124 - (29%)
Similarity:60/124 - (48%) Gaps:13/124 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQFHGVRLD 141
            ::|.||...|.::.:.|||.|.|.|:|  ||..|||..|..|.:.:|:.|.....:|..:|:.|.
Zfish    12 IIVGNLHRCVTEEILFELFLQAGPVDK--VHISRDGQQLPYACVYYKHAEAVPYAVELLNGIWLY 74

  Fly   142 GRRLKLHLVQNTRNFKRTDVDDLSLRMG--------SFKTRFLQ--NGTFKTRSLQNGF 190
            |:.:||. ..|..::.|:||....:..|        :::...:.  ||:....|..||:
Zfish    75 GQPIKLQ-CNNGGHYHRSDVFAFHMENGLITNSADSAYRDNMVSNLNGSPGVESHSNGW 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref2NP_609574.1 RRM_SF 75..149 CDD:473069 26/71 (37%)
rbm11NP_001373296.2 None

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