DRSC/TRiP Functional Genomics Resources

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Protein Alignment eRF3 and SKI7

DIOPT Version :9

Sequence 1:NP_001260415.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_014719.1 Gene:SKI7 / 854243 SGDID:S000005602 Length:747 Species:Saccharomyces cerevisiae


Alignment Length:570 Identity:126/570 - (22%)
Similarity:206/570 - (36%) Gaps:179/570 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 NETDPADSWDVDDAVITPEDEEVEDAEFTEGEATPKVSKKKVVKVEENRSKREHVNV-------- 198
            |...|.|.  :..|.:...:|::|:...   ::.||..||:.:.::  ....|.:::        
Yeast   208 NRPSPDDI--IQSAQLNAFNEKLENLNI---KSVPKAEKKEPINLQ--TPPTESIDIHSFIATHP 265

  Fly   199 -----VFIGHVDAGKSTIGGQIM------SLTGMVDKRTLEKYEREAREKSRESWYLSWALDTNQ 252
                 :|:|..:|||||:.|.::      |::.|   |.|:|........|..|:.:  .||..:
Yeast   266 LNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSM---RELQKKSSNLDPSSSNSFKV--ILDNTK 325

  Fly   253 EERDKG-----KTVEVGRAFFETD----RKHFTILDAPGH-KSFVPNMIGGAAQAD--LAVLVIS 305
            .||:.|     |.::|     |.|    ....|::|.||. |.|....:......|  :.||||.
Yeast   326 TERENGFSMFKKVIQV-----ENDLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEVYVLVID 385

  Fly   306 ARKGEFETGFDRGGQTREHAML-------AKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKIL 363
            .....:|...| |...:.:.:|       ..:|..|||::|:||.|  .::||:.|....:.: |
Yeast   386 CNYDSWEKSLD-GPNNQIYEILKVISYLNKNSACKKHLIILLNKAD--LISWDKHRLEMIQSE-L 446

  Fly   364 PYLKKLGFN-PAKDLTFMPCSGLSGYGLK-----------------DQIPETLCPWYRGPAFIPF 410
            .|:.|..|. ...:..|:|||||.|..|.                 :.:||    ||.||.|...
Yeast   447 NYVLKENFQWTDAEFQFIPCSGLLGSNLNKTENITKSKYKSEFDSINYVPE----WYEGPTFFSQ 507

  Fly   411 IDELPSLNRKS-----DGPFIMPIVDKYKDMGTVVMGKV----------------ESGTARKGQN 454
            :..|...|...     :.||:          ||::...|                .||..:.||.
Yeast   508 LYLLVEHNMNKIETTLEEPFV----------GTILQSSVLQPIAEINYVSLKVLINSGYIQSGQT 562

  Fly   455 LLVMPNRTQVAVDQLFSDDFEVTS-VGPGENVKIKLKGIEEEDVSPGFVLCDAANPIKTGKIFDA 518
            :.:   .||.       :||.... |...:|.|..|:...:.::|.|.      ||         
Yeast   563 IEI---HTQY-------EDFHYYGIVSRMKNSKQILETNTKNNISVGL------NP--------- 602

  Fly   519 QVVILEHKSIICAGYSAVMHIHCAAEEVTVKAL------ICLVDKKSGDKSKTRPRFVKQDQVAI 577
              .|||          .::.|| ..|:.|.|..      |.:..:|:...|...|..:|      
Yeast   603 --DILE----------VLVKIH-NTEDFTKKQFHIRKGDIIIHSRKTNTLSPNLPNTLK------ 648

  Fly   578 MRIECSGMICLEQFKLFPQ---------MGRFTLRDENKTIAIGKVLKVV 618
                   ::.|...||..|         :|...|...|.|....|::|::
Yeast   649 -------LLALRLIKLSIQTHALSDPVDLGSELLLYHNLTHNAVKLVKIL 691

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eRF3NP_001260415.1 PAM2 12..28 CDD:284542
TEF1 191..619 CDD:227581 116/521 (22%)
EF1_alpha 197..416 CDD:206670 70/274 (26%)
eRF3_II 424..505 CDD:293906 19/97 (20%)
eRF3_C_III 511..617 CDD:294003 22/120 (18%)
SKI7NP_014719.1 TEF1 261..747 CDD:227581 115/510 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5256
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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