DRSC/TRiP Functional Genomics Resources

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Protein Alignment eRF3 and gspt1

DIOPT Version :9

Sequence 1:NP_001260415.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001015805.2 Gene:gspt1 / 548522 XenbaseID:XB-GENE-955565 Length:573 Species:Xenopus tropicalis


Alignment Length:628 Identity:361/628 - (57%)
Similarity:427/628 - (67%) Gaps:84/628 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAAQENTEISTKFSTLNVNAVEFVPSFSYNSVVNVAEEAAAVVVAAAAAEETADPGPASGSATPA 65
            |.|.| .::::..:.|||||..|||:      |:.||                        ..|:
 Frog    16 MEATE-AQLNSSLAQLNVNAKPFVPN------VHAAE------------------------FVPS 49

  Fly    66 TTPDSVGSGGSTAGAAPPPPTAQGAGAAAPSAQPPTSSSNSASPAPGSPATTPSAGAAAADPTPI 130
            ...||.                            |:..........||   .|:.|...|:|.  
 Frog    50 FLRDSA----------------------------PSDGQEEEEEQQGS---CPTVGMDVAEPV-- 81

  Fly   131 DGLNPSDKIANNETD--PADSWDVDDAVITPE---DEEVEDAEFTEG-----EATPKVSKKKVVK 185
                    :.|.||:  |.:|||..:..|..|   ..|.:.....||     |....:.|.|.:.
 Frog    82 --------VENGETEMSPEESWDHKEEPIEAEPGGGSEGDGGTTEEGASEMMEEEEDIPKPKTIV 138

  Fly   186 VEENRSKREHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDT 250
            |..:..|:|||||||||||||||||||||||.|||||||||||||||||:||:||:|||||||||
 Frog   139 VPPDAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDT 203

  Fly   251 NQEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEFETGF 315
            ||||||||||||||||:|||::||||||||||||||||||||||:||||||||||||||||||||
 Frog   204 NQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGF 268

  Fly   316 DRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGFNPAKDLTFM 380
            ::|||||||||||||||||||:||:||||||||||...||.|||:|::|:|||:||||.||:.||
 Frog   269 EKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNDRYEECKEKLVPFLKKVGFNPKKDIYFM 333

  Fly   381 PCSGLSGYGLKDQIPETLCPWYRGPAFIPFIDELPSLNRKSDGPFIMPIVDKYKDMGTVVMGKVE 445
            |||||:|..||:  |...||||.|..|||::|.||:.||..|||..:|||||||||||||:||:|
 Frog   334 PCSGLTGANLKE--PVEACPWYIGLPFIPYLDSLPNFNRSVDGPVRLPIVDKYKDMGTVVLGKLE 396

  Fly   446 SGTARKGQNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPGFVLCDAANPI 510
            ||:..|||.|.:|||:..|.|..|.||:.|...|.||||:|::|||||||::.|||:|||..|..
 Frog   397 SGSICKGQQLTMMPNKHTVEVLSLLSDEVETELVAPGENLKLRLKGIEEEEILPGFILCDPNNLC 461

  Fly   511 KTGKIFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKALICLVDKKSGDKSKTRPRFVKQDQV 575
            .:|:.||||:||:|||||||.||:||:|||...|||.:.|||||||||||:||||||||||||||
 Frog   462 HSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQV 526

  Fly   576 AIMRIECSGMICLEQFKLFPQMGRFTLRDENKTIAIGKVLKVV 618
            .|.|:..:|.||||.||.||||||||||||.||||||||||:|
 Frog   527 CIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eRF3NP_001260415.1 PAM2 12..28 CDD:284542 8/15 (53%)
TEF1 191..619 CDD:227581 321/428 (75%)
EF1_alpha 197..416 CDD:206670 179/218 (82%)
eRF3_II 424..505 CDD:293906 49/80 (61%)
eRF3_C_III 511..617 CDD:294003 79/105 (75%)
gspt1NP_001015805.2 TEF1 146..570 CDD:227581 320/426 (75%)
EF1_alpha 150..366 CDD:206670 178/217 (82%)
eRF3_II 375..456 CDD:293906 49/80 (61%)
eRF3_C_III 462..568 CDD:294003 79/105 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 365 1.000 Domainoid score I929
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68226
Inparanoid 1 1.050 681 1.000 Inparanoid score I707
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1150082at2759
OrthoFinder 1 1.000 - - FOG0002347
OrthoInspector 1 1.000 - - oto102779
Panther 1 1.100 - - LDO PTHR23115
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X149
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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