DRSC/TRiP Functional Genomics Resources

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Protein Alignment eRF3 and 42Sp50

DIOPT Version :9

Sequence 1:NP_001260415.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001011438.1 Gene:42Sp50 / 496924 XenbaseID:XB-GENE-5853280 Length:463 Species:Xenopus tropicalis


Alignment Length:450 Identity:165/450 - (36%)
Similarity:250/450 - (55%) Gaps:33/450 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 KREHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTNQEERD 256
            ::.|:|||.|||||:||||..|.::...|..|.|.|||.|..|.:..:.|:..:|.||..:.||:
 Frog     7 QKTHLNVVIIGHVDSGKSTTTGHLIYKCGGFDPRALEKVEAAAAQLGKGSFKFAWILDKLKAERE 71

  Fly   257 KGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEFETGFDRGGQT 321
            :|.|:::....|:|:|...||:|||||:.|:.|||.|.:|||:|:||:||..||||.|..|.|||
 Frog    72 RGITIDISLWKFQTNRFTITIIDAPGHRDFIKNMITGTSQADVALLVVSAATGEFEAGVSRNGQT 136

  Fly   322 REHAMLAKTAGVKHLVVLVNKMD--DPTVNWDQTRYNECKDKILPYLKKLGFNPAKDLTFMPCSG 384
            ||||:||.|.|||.::|.|||||  ||.  :...|::|....:..||||:|:||. .:.|:|.||
 Frog   137 REHALLAYTMGVKQMIVCVNKMDLTDPP--YSHKRFDEVVRNVTVYLKKIGYNPT-TIPFVPVSG 198

  Fly   385 LSGYGLKDQIPETLCPWY------------RGPAFIPFIDELPSLNRKSDGPFIMPIVDKYK--D 435
            .:|..:..  |.....|:            :|.:.:..:|.|....|.::.|..:|:.|.||  .
 Frog   199 WTGENISS--PSQKMGWFKGWKVKRKDGFTKGQSLLEVLDALVPPVRPANKPLRLPLQDVYKIGG 261

  Fly   436 MGTVVMGKVESGTARKGQNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPG 500
            :|||.:||:|:|..:.|..:...|:.....|..:......:.:..||.||...:|.|..:.:..|
 Frog   262 IGTVPVGKIETGILKPGMTITFAPSGFAAEVKSIEMHHEPLQTAFPGFNVGFNVKNIAVKSLKRG 326

  Fly   501 FVLCDA-ANPIKTGKIFDAQVVILEHKSIICAGYSAVM-----HIHCAAEEVTVKALICLVDKKS 559
            .|..:: ::|......|.|||:||.|..:|.||||.|:     ||.|...|:..|     :|:::
 Frog   327 NVAGNSKSDPPTEASSFTAQVIILNHPGLIKAGYSPVIDCHTAHITCQFTELQEK-----IDRRT 386

  Fly   560 GDKSKTRPRFVKQDQVAIMRIECSGMICLEQFKLFPQMGRFTLRDENKTIAIGKVLKVVE 619
            |.|.:..|..:|....||:.::.....|:|:|..:|.:|||..||..:|:|:| |:|.||
 Frog   387 GKKLEDNPGVLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVG-VVKSVE 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eRF3NP_001260415.1 PAM2 12..28 CDD:284542
TEF1 191..619 CDD:227581 163/448 (36%)
EF1_alpha 197..416 CDD:206670 98/232 (42%)
eRF3_II 424..505 CDD:293906 23/82 (28%)
eRF3_C_III 511..617 CDD:294003 38/110 (35%)
42Sp50NP_001011438.1 PTZ00141 7..447 CDD:185474 164/449 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1150082at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X149
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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