DRSC/TRiP Functional Genomics Resources

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Protein Alignment eRF3 and gspt1

DIOPT Version :9

Sequence 1:NP_001260415.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001003992.1 Gene:gspt1 / 445485 ZFINID:ZDB-GENE-040822-36 Length:564 Species:Danio rerio


Alignment Length:618 Identity:363/618 - (58%)
Similarity:428/618 - (69%) Gaps:78/618 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AQENTEISTKFSTLNVNAVEFVPSF-SYNSVVNVAEEAAAVVVAAAAAEETADP-GPASGSATPA 65
            |..:||:.:.|:.|||||.|||||| |.....|...:...||    |:.|.::| |......|.|
Zfish    19 ATADTELQSAFTGLNVNAPEFVPSFLSRGPPENATSDGTDVV----ASMEISEPVGAVENGETDA 79

  Fly    66 TTPDSVGSGGSTAGAAPPPPTAQGAGAAAPSAQPPTSSSNSASPAPGSPATTPSAGAAAADPTPI 130
            :..::....|                      :|     :...|..||||.|...|..|.|.   
Zfish    80 SAVETWEQKG----------------------EP-----DKEEPGGGSPADTGCFGDEAQDE--- 114

  Fly   131 DGLNPSDKIANNETDPADSWDVDDAVITPEDEEVEDAEFTEGEATPKVSKKKVVKVEENRSKREH 195
                                      :..||||:         .|||:...     ..:..|:||
Zfish   115 --------------------------MMEEDEEM---------PTPKLPPP-----PPDAPKKEH 139

  Fly   196 VNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTNQEERDKGKT 260
            |||||||||||||||||||||.|||||:|||||||||||:||:||:|||||||||||||||||||
Zfish   140 VNVVFIGHVDAGKSTIGGQIMYLTGMVEKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKT 204

  Fly   261 VEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEFETGFDRGGQTREHA 325
            ||||||:|||::||||||||||||||||||||||:||||||||||||||||||||::||||||||
Zfish   205 VEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA 269

  Fly   326 MLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGFNPAKDLTFMPCSGLSGYGL 390
            |||||||||||:||:||||||||||...||.|||:|::|:|||:||||.||:.|||||||:|..|
Zfish   270 MLAKTAGVKHLIVLINKMDDPTVNWSLDRYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANL 334

  Fly   391 KDQIPETLCPWYRGPAFIPFIDELPSLNRKSDGPFIMPIVDKYKDMGTVVMGKVESGTARKGQNL 455
            |:.  ..|||||.|..|||.:|.||..:|.||||..:|||||||||||||:||:|||:..|.|.|
Zfish   335 KES--SDLCPWYTGLPFIPHLDSLPIFSRSSDGPLRLPIVDKYKDMGTVVLGKLESGSIAKAQQL 397

  Fly   456 LVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPGFVLCDAANPIKTGKIFDAQV 520
            ::||||..|.|..|.|||.|....|||||:|::|||||||::.|||:||:|.|...:|:.||||:
Zfish   398 IMMPNRHTVEVLSLLSDDVETEYAGPGENLKLRLKGIEEEEILPGFILCNAENLCHSGRTFDAQI 462

  Fly   521 VILEHKSIICAGYSAVMHIHCAAEEVTVKALICLVDKKSGDKSKTRPRFVKQDQVAIMRIECSGM 585
            ||:|||||||.||:||:|||...|||.:.|||||||||:|:||||||||||||||.|.|:..:|.
Zfish   463 VIIEHKSIICPGYNAVLHIHTCIEEVQISALICLVDKKTGEKSKTRPRFVKQDQVCIARLRAAGT 527

  Fly   586 ICLEQFKLFPQMGRFTLRDENKTIAIGKVLKVV 618
            ||||.||.||||||||||||.||||||||||:|
Zfish   528 ICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eRF3NP_001260415.1 PAM2 12..28 CDD:284542 12/16 (75%)
TEF1 191..619 CDD:227581 320/428 (75%)
EF1_alpha 197..416 CDD:206670 178/218 (82%)
eRF3_II 424..505 CDD:293906 50/80 (63%)
eRF3_C_III 511..617 CDD:294003 78/105 (74%)
gspt1NP_001003992.1 PAM2 <32..44 CDD:284542 10/11 (91%)
TEF1 138..561 CDD:227581 319/425 (75%)
EF1_alpha 141..358 CDD:206670 178/218 (82%)
eRF3_II 366..447 CDD:293906 50/80 (63%)
eRF3_C_III 453..559 CDD:294003 78/105 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 364 1.000 Domainoid score I890
eggNOG 1 0.900 - - E1_COG5256
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68226
Inparanoid 1 1.050 692 1.000 Inparanoid score I665
OMA 1 1.010 - - QHG54149
OrthoDB 1 1.010 - - D1150082at2759
OrthoFinder 1 1.000 - - FOG0002347
OrthoInspector 1 1.000 - - otm26021
orthoMCL 1 0.900 - - OOG6_101550
Panther 1 1.100 - - O PTHR23115
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2104
SonicParanoid 1 1.000 - - X149
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.870

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