DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eRF3 and CG4849

DIOPT Version :9

Sequence 1:NP_001260415.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_651605.1 Gene:CG4849 / 43358 FlyBaseID:FBgn0039566 Length:975 Species:Drosophila melanogaster


Alignment Length:471 Identity:97/471 - (20%)
Similarity:163/471 - (34%) Gaps:133/471 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 NPSDKIANNETDPADSWDVD-DAVITPEDE------------------EVEDAEFTEGEATPKVS 179
            :|.|.:..:|.:|.:..|.: .||:..||:                  :.|||:..:......|.
  Fly    36 DPEDAMDEDEVEPQEDEDKEVTAVVLHEDKRYYPSAVEVYGPDVETIVQEEDAQPLDKPLIEPVK 100

  Fly   180 KKKVVKVEENRSKREH---------------VNVVFIGHVDAGKSTIGGQIMSLTGMVD---KRT 226
            |.|....|::..:..:               .||..:||:..||:|          .||   ::|
  Fly   101 KLKFQIKEQDMQETTYDMEFMADLMDTPPLIRNVALVGHLHHGKTT----------FVDCLIRQT 155

  Fly   227 LEKYEREAREKSRESWYLSWALDTNQEERDKG---KTVEVGRAFFETDRKHF--TILDAPGHKSF 286
            ..::|.....:.|.:       ||...|:::|   |...|.....:..:|.:  .|.|.|||.:|
  Fly   156 HPQFETMEERQLRYT-------DTLFTEQERGCSIKATPVTLVLQDVKQKSYLLNIFDTPGHVNF 213

  Fly   287 VPNMIGGAAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV-------VLVNKMD 344
            ..........:|..||.|.|.:|               .||.....:||.|       |.:||:|
  Fly   214 SDEATAAMRMSDGVVLFIDAAEG---------------VMLNTERLLKHAVQERQAITVCINKID 263

  Fly   345 DPTVNW---DQTRYNECK---DKILPYLKKLGFNPAKDLTFMP-----CSGLSGYG----LKDQI 394
            ...:..   .|..|.:.|   :::...|...| .|..:|...|     |...|.||    || ..
  Fly   264 RLILELKLPPQDAYFKLKHIVEEVNGLLSTYG-APDDNLLVSPILGNVCFASSLYGFCFTLK-SF 326

  Fly   395 PETLCPWYRGPAFIPFIDEL------PSLNRK---------SDGPFIMPIVDKYKDMGTVVMGKV 444
            .:.....|.|.|::.|...|      .|..||         :...|:..|::....:...|:|.|
  Fly   327 AKLYADTYEGVAYLDFAKRLWGDMYFNSKTRKFSKKQPHNSAQRSFVEFILEPMYKLIAQVVGDV 391

  Fly   445 ESGTARKGQNLLVMPNRTQ----------VAVDQLFSD-----DFEVTSV-GPGENVKIKL---- 489
            ::..:.....|.|..::.:          :..::...|     |..|..: .|.||.|.|:    
  Fly   392 DTTLSDTLAELNVRVSKEEMKSNIRPLLRLVCNRFMGDCSGFVDMCVEHIKSPLENAKRKVDHIY 456

  Fly   490 KGIEEEDVSPGFVLCD 505
            .|.:|.|:....:.|:
  Fly   457 TGPKEGDIYRDMISCN 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eRF3NP_001260415.1 PAM2 12..28 CDD:284542
TEF1 191..619 CDD:227581 81/395 (21%)
EF1_alpha 197..416 CDD:206670 59/254 (23%)
eRF3_II 424..505 CDD:293906 18/100 (18%)
eRF3_C_III 511..617 CDD:294003
CG4849NP_651605.1 EFTUD2 4..111 CDD:292623 16/74 (22%)
PTZ00416 115..957 CDD:240409 81/392 (21%)
Snu114p 132..340 CDD:206730 57/241 (24%)
Translation_Factor_II_like 477..568 CDD:295476
snRNP_III 589..660 CDD:293921
EF2_IV_snRNP 660..837 CDD:238840
eEF2_C_snRNP 832..911 CDD:239765
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464572
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.