DRSC/TRiP Functional Genomics Resources

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Protein Alignment eRF3 and eEF2

DIOPT Version :9

Sequence 1:NP_001260415.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_525105.2 Gene:eEF2 / 35422 FlyBaseID:FBgn0000559 Length:844 Species:Drosophila melanogaster


Alignment Length:639 Identity:122/639 - (19%)
Similarity:195/639 - (30%) Gaps:279/639 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 FTEGEATPKVSKKKVVKVEENRSKREHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYERE 233
            ||..|....:.||:.::           |:..|.|||.||||:...::|..|::           
  Fly     4 FTVDEIRGLMDKKRNIR-----------NMSVIAHVDHGKSTLTDSLVSKAGII----------- 46

  Fly   234 AREKSRESWYLSWALDTNQEERDKGKTVE--VGRAFFETDRKH------------------FTIL 278
            |..|:.|:.:    .||.::|:::..|::  ....:||.:.|.                  ..::
  Fly    47 AGAKAGETRF----TDTRKDEQERCITIKSTAISMYFEVEEKDLVFITHPDQREKECKGFLINLI 107

  Fly   279 DAPGHKSFVPNMIGGAAQADLAVLVISARKG---EFETGF------------------------- 315
            |:|||..|...:.......|.|::|:....|   :.||..                         
  Fly   108 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPILFMNKMDRALLELQ 172

  Fly   316 -------------------------DRGGQTREHAMLAKTAGVK--------------------- 334
                                     |.||...|..:......|.                     
  Fly   173 LDAEELYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYSE 237

  Fly   335 ----HLVVLVNKM------DDPTVNWDQTRYNECK---------------DKILPY--------L 366
                .:|.|:|::      :..|..|.:.:..:.|               |.|:.|        |
  Fly   238 KFKIDVVKLMNRLWGENFFNAKTKKWQKQKEADNKRSFCMYILDPIYKVFDAIMNYKKEEIGTLL 302

  Fly   367 KKLGF-----NPAKD---------LTFMPCSGLSGYGLKDQIP--------------ETLCPWYR 403
            :|:|.     :..||         .|::|    :|..|...|.              |.|   |.
  Fly   303 EKIGVTLKHEDKDKDGKALLKTVMRTWLP----AGEALLQMIAIHLPSPVVAQKYRMEML---YE 360

  Fly   404 GPAFIPFIDELPSLNRKS---DGPFIM------PIVDK--YKDMGTVVMGKVESG---------- 447
            ||.     |:..::..||   |||.:|      |..||  :...|.|..|||.:|          
  Fly   361 GPH-----DDEAAIAVKSCDPDGPLMMYISKMVPTSDKGRFYAFGRVFAGKVATGQKCRIMGPNY 420

  Fly   448 TARKGQNL---------LVMPNRTQ-------------VAVDQLFSDDFEVTSVGPGENVKIKLK 490
            |..|.::|         |:|....:             |.|||.......:|:.....|:|:.  
  Fly   421 TPGKKEDLYEKAIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKDAHNMKVM-- 483

  Fly   491 GIEEEDVSPGF-VLCDAANPIKTGKIFD-----------AQVVILEHKSIICAGYSAVMHIHCAA 543
               :..|||.. |..:..||....|:.:           .|.:|.|....|.|| :..:|:    
  Fly   484 ---KFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAG-AGELHL---- 540

  Fly   544 EEVTVKAL----ICLVDKKSGDKSKTRPRFVKQDQVAIMR---IECSGMICLEQ 590
             |:.:|.|    .|:..|||             |.|...|   .|.|..:||.:
  Fly   541 -EICLKDLEEDHACIPLKKS-------------DPVVSYRETVSEESDQMCLSK 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eRF3NP_001260415.1 PAM2 12..28 CDD:284542
TEF1 191..619 CDD:227581 117/617 (19%)
EF1_alpha 197..416 CDD:206670 62/373 (17%)
eRF3_II 424..505 CDD:293906 27/121 (22%)
eRF3_C_III 511..617 CDD:294003 22/98 (22%)
eEF2NP_525105.2 PTZ00416 1..844 CDD:240409 122/639 (19%)
EF2 20..236 CDD:206672 37/241 (15%)
EF2_snRNP_like_II 380..474 CDD:293901 20/93 (22%)
EF2_snRNP_III 489..560 CDD:293918 19/89 (21%)
aeEF2_snRNP_like_IV 560..732 CDD:238839 7/21 (33%)
eEF2_snRNP_like_C 728..807 CDD:239763
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464685
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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