DRSC/TRiP Functional Genomics Resources

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Protein Alignment eRF3 and eef-1A.2

DIOPT Version :10

Sequence 1:NP_477259.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_509323.1 Gene:eef-1A.2 / 181044 WormBaseID:WBGene00001169 Length:463 Species:Caenorhabditis elegans


Alignment Length:450 Identity:164/450 - (36%)
Similarity:259/450 - (57%) Gaps:33/450 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 KREHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTNQEERD 256
            ::.|:|:|.|||||:||||..|.::...|.:||||:||:|:||:|..:.|:..:|.||..:.||:
 Worm     4 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68

  Fly   257 KGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEFETGFDRGGQT 321
            :|.|:::....|||.:.:.||:|||||:.|:.|||.|.:|||.||||::...||||.|..:.|||
 Worm    69 RGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQT 133

  Fly   322 REHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGFNPAKDLTFMPCSGLS 386
            ||||:||:|.|||.|:|..||||.....:.:.|:.|..:::..::||:|:|| |.:.|:|.||.:
 Worm   134 REHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNP-KAVPFVPISGFN 197

  Fly   387 GYGLKDQIPE--TLCPWYRGPA------------FIPFIDELPSLNRKSDGPFIMPIVDKYK--D 435
            |    |.:.|  :..||::|.|            .:..:|.:....|.:|.|..:|:.|.||  .
 Worm   198 G----DNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGG 258

  Fly   436 MGTVVMGKVESGTARKGQNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPG 500
            :|||.:|:||:|..:.|..:...|......|..:......:....||:||...:|.:..:|:..|
 Worm   259 IGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRG 323

  Fly   501 FVLCDA-ANPIKTGKIFDAQVVILEHKSIICAGYSAVM-----HIHCAAEEVTVKALICLVDKKS 559
            .|..|: .:|.|..:.|.|||:|:.|...|..||:.|:     ||.|...|:..|     ||:::
 Worm   324 SVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEK-----VDRRT 383

  Fly   560 GDKSKTRPRFVKQDQVAIMRIECSGMICLEQFKLFPQMGRFTLRDENKTIAIGKVLKVVE 619
            |.|.:..|:|:|.....|:.:..:..:|:|.|..:..:|||.:||..:|:|:| |:|.||
 Worm   384 GKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVG-VIKSVE 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eRF3NP_477259.1 PAM2 12..28 CDD:429316
EF1_alpha 197..416 CDD:206670 97/232 (42%)
eRF3_II 424..505 CDD:293906 23/82 (28%)
eRF3_C_III 511..617 CDD:294003 36/110 (33%)
eef-1A.2NP_509323.1 PTZ00141 1..461 CDD:185474 163/449 (36%)
Blue background indicates that the domain is not in the aligned region.

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