DRSC/TRiP Functional Genomics Resources

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Protein Alignment eRF3 and erfa-3

DIOPT Version :10

Sequence 1:NP_477259.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001256292.1 Gene:erfa-3 / 179537 WormBaseID:WBGene00010405 Length:532 Species:Caenorhabditis elegans


Alignment Length:530 Identity:306/530 - (57%)
Similarity:384/530 - (72%) Gaps:24/530 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 SSNSASPAPGSPATTPSAGAAAADPTPIDGLNPSDKIANNETDPAD-SWDVDDAVITPEDEEVED 166
            ::|:....||.| .||....||.:||       .|..|..:|.||. ..:|.:.|...|...|..
 Worm    14 NANARPFVPGQP-YTPQPEQAAPEPT-------EDWEAQADTSPAAVQPEVAEPVAVQESAPVAP 70

  Fly   167 AEFTEG---EATPK------VSKK--KVVKVEENRSKREHVNVVFIGHVDAGKSTIGGQIMSLTG 220
            ...||.   |.||:      ::||  :.|.|::...| ||:|:||:|||||||||||||:|.|||
 Worm    71 VSATEAPKKEPTPEEDLVAPLAKKFQRTVYVDDGTHK-EHINMVFVGHVDAGKSTIGGQLMFLTG 134

  Fly   221 MVDKRTLEKYEREAREKSRESWYLSWALDTNQEERDKGKTVEVGRAFFETDRKHFTILDAPGHKS 285
            ||||||||||||||:||.||||||||.:|||.|||:||||||||||:|||:::||||||||||||
 Worm   135 MVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKS 199

  Fly   286 FVPNMIGGAAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNW 350
            ||||||.||.||||||||||||:||||||||||||||||:||.|||||||||:||||||||||.|
 Worm   200 FVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKW 264

  Fly   351 DQTRYNECKDKILPYLKKLGFNPAKDLTFMPCSGLSGYGLKDQIPETLCPWYRGPAFIPFIDE-L 414
            ::.|:.|.:.|:.|:|:||||||..|:|::|||||:|..:||:...:...||.||.||.|||. |
 Worm   265 EEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEGNWYSGPCFIEFIDVLL 329

  Fly   415 PSLNRKSDGPFIMPIVDKYKDMGTVVMGKVESGTARKGQNLLVMPNRTQVAVDQLFSDDFEVTSV 479
            ||..|..:||....:.:||.:||||::||:|||..:||..|:||||:..|.|.|:::||.|...|
 Worm   330 PSYKRDFNGPVRCTVAEKYSEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERV 394

  Fly   480 GPGENVKIKLKGIEEEDVSPGFVLCDAANPIKTGKIFDAQVVILEHKSIICAGYSAVMHIHCAAE 544
            ..|:|:|.|||||||.::..||::|...:..|||::|||:|::|||:|||.:|||.|:||..|.|
 Worm   395 VAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVE 459

  Fly   545 EVTVKALICLVDKKSGDKSKTRPRFVKQDQVAIMRIECSGMICLEQFKLFPQMGRFTLRDENKTI 609
            |||||.:|..:|||:|:|.  |.:|||||:..|||:|......||.||.:|.:||||||||.|||
 Worm   460 EVTVKGVIATIDKKTGEKK--RAKFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTI 522

  Fly   610 AIGKVLKVVE 619
            ||||||||||
 Worm   523 AIGKVLKVVE 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eRF3NP_477259.1 PAM2 12..28 CDD:429316
EF1_alpha 197..416 CDD:206670 164/219 (75%)
eRF3_II 424..505 CDD:293906 38/80 (48%)
eRF3_C_III 511..617 CDD:294003 64/105 (61%)
erfa-3NP_001256292.1 Atrophin-1 <19..>186 CDD:460830 93/175 (53%)
EF1_alpha 111..330 CDD:206670 163/218 (75%)
eRF3_II 339..420 CDD:293906 38/80 (48%)
eRF3_C_III 426..530 CDD:294003 64/105 (61%)
Blue background indicates that the domain is not in the aligned region.

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