DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pkd2 and pkd1l2a

DIOPT Version :9

Sequence 1:NP_609561.2 Gene:Pkd2 / 34651 FlyBaseID:FBgn0041195 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_017212723.2 Gene:pkd1l2a / 497373 ZFINID:ZDB-GENE-050208-89 Length:2484 Species:Danio rerio


Alignment Length:501 Identity:120/501 - (23%)
Similarity:218/501 - (43%) Gaps:98/501 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   398 GSEDVSGNYLKD---DSDSIQANMSFHHLEGRVFLYEN--------------------LLLGPPR 439
            |..|.:..||..   .|.|...:.:.:|.:  :|::.|                    .|:|..|
Zfish  1996 GQRDPNAYYLTHHIRQSFSTGISETLNHKD--IFIWANSSLLRNLYGQYPGFITDGNSKLVGNAR 2058

  Fly   440 LRQIRVRKESCYVNDAFIRYFNTCYAAYSSGAEDRKPMHKGSP-------------------FRT 485
            :||:|||:::|.:.:........|:|.||..:||   |...||                   ::|
Zfish  2059 IRQVRVRRDTCKIANPMQYSVRDCHAPYSWESED---MGSYSPGWNQTRNVNGSKTVLKPWYYQT 2120

  Fly   486 MHDLDSTPIWTVLAFYRTGGYTVNLDYDKDRNVKIINDLKDIHWLDRGSRLCLVEFNLFNENTDI 550
            ...|.:.|:|..||.|:.||:.|:|..|:....:::..|.|..|||..:|...|||.::|.|.::
Zfish  2121 QAKLRANPVWGGLALYKGGGFVVDLGPDQKNASRLLQYLFDNTWLDVYTRAVFVEFTVYNANVNL 2185

  Fly   551 FQSIKLIAEIPPTGGVIPQAHLQTVKMYSFFTDRSMLMTVIYIFWYIMVIYYTIYEITEIRKSGI 615
            |..:.||.|....|....::.:|.|.:|.......:.:......:||.::||.:.: .::.|...
Zfish  2186 FCIVTLIFETTGVGTFQYRSEVQAVHLYQSTGGFHVFVMASEAIYYIFILYYMVVQ-GKLMKQQK 2249

  Fly   616 KIYFCSMLNILDCAILLGCYLALVYNIWHSFKV-MSLTARAHSDVTY--QSLDVLCFWN------ 671
            ..||.|..|:|:        ||::...|.:..| :..|...:.|:.:  .:.|:...:|      
Zfish  2250 WAYFKSKWNLLE--------LAIIILSWSALSVFVKRTILGNRDIEFYQNNKDMFVSFNETATAD 2306

  Fly   672 IIYVDMMAILAFLVWIKIFKFISFNKTLVQFTTTLKRCSKDLAGFSLMFGIVFLAYAQLGLLLFG 736
            .:...::|.|..|..||::..:..|..|...|:||:|...|::||.::..|:||||:....|::|
Zfish  2307 AVLGYLIAFLVLLATIKLWHLLRLNPKLHMITSTLQRAWTDISGFIVVMTIMFLAYSIACNLMYG 2371

  Fly   737 TKHPDFRNFITSILTMIRMILGDFQYNLIEQANRVLGPIYFLTYILLVFFILLNMFLAIIMETYN 801
            .:...:|..:.:..|:|.:.||.|.|:.:...|.|||.....:.|:.:.|::||:|:::|:..:|
Zfish  2372 WRLNSYRTLLEAAQTIICLQLGIFNYDEVLDYNPVLGAFLIGSCIIFMTFVVLNLFISVILVAFN 2436

  Fly   802 TVKGEITQGRSHLGSYIYRKLSGMLYWITHCGRKRRHHPQASETED 847
                                             :.:.||..||.|:
Zfish  2437 ---------------------------------EEQLHPTPSEEEE 2449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pkd2NP_609561.2 PKD_channel 402..803 CDD:285288 113/451 (25%)
pkd1l2aXP_017212723.2 CLECT 40..159 CDD:153057
Gal_Lectin 174..258 CDD:307994
PKD 275..346 CDD:214510
GPS 1298..1343 CDD:321989
PLAT_polycystin 1406..1525 CDD:238850
PKD_channel 2025..2437 CDD:332708 108/458 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586384
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.