DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkd2 and PKD1L3

DIOPT Version :10

Sequence 1:NP_609561.2 Gene:Pkd2 / 34651 FlyBaseID:FBgn0041195 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_853514.1 Gene:PKD1L3 / 342372 HGNCID:21716 Length:1732 Species:Homo sapiens


Alignment Length:273 Identity:64/273 - (23%)
Similarity:128/273 - (46%) Gaps:35/273 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   585 SMLMTVIYIFWYIMVIYYTIYEITEIRKSGIKIYFCSMLNILDCAILLGCYLALVYNIWHSFKVM 649
            |::..|||   |::|.||...:..::::...: :|....||||.:|:|..::.|..::    |.:
Human  1466 SIISQVIY---YLLVCYYAFIQGCQLKQQKWR-FFTGKRNILDTSIILISFILLGLDM----KSI 1522

  Fly   650 SL----TARAHSDVT-----YQSLDVLCFWNIIYVDMMAILAFLVWIKIFKFISFNKTLVQFTTT 705
            ||    .||...|..     |:::.|    |.....::.....|..::::..:..:..|...:.|
Human  1523 SLHKKNMARYRDDQDRFISFYEAVKV----NSAATHLVGFPVLLATVQLWNLLRHSPRLRVISRT 1583

  Fly   706 LKRCSKDLAGFSLMFGIVFLAYAQLGLLLFGTKHPDFRNFITSILTMIRMILGDFQYNLIEQANR 770
            |.|...::.||.|:..|:...||....||||....|:|.|.:|.:|::.:::|......:...:.
Human  1584 LSRAWDEVVGFLLIILILLTGYAIAFNLLFGCSISDYRTFFSSAVTVVGLLMGISHQEEVFALDP 1648

  Fly   771 VLGPIYFLTYILLVFFILLNMFLAIIMETYNTVKGEITQGRSHLGSYIYRKLSGML--YWITHCG 833
            |||....||.::|:..:::|:|::.|:..:...:..:.: .:.|...:.:|||.:|  .|     
Human  1649 VLGTFLILTSVILMVLVVINLFVSAILMAFGKERKSLKK-EAALIDTLLQKLSNLLGISW----- 1707

  Fly   834 RKRRHHPQASETE 846
                  ||.:.:|
Human  1708 ------PQKTSSE 1714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pkd2NP_609561.2 DUF5585 <29..272 CDD:465521
Polycystin_dom 404..578 CDD:466668
PKD_channel 579..803 CDD:462341 55/226 (24%)
PKD1L3NP_853514.1 CLECT 33..138 CDD:153057
GPS 633..672 CDD:470616
GPS. /evidence=ECO:0000255|PROSITE-ProRule:PRU00098 635..685
PLAT_polycystin 743..859 CDD:238850
PKD_channel 1467..1678 CDD:462341 54/222 (24%)
Channel pore-region 1613..1651 9/37 (24%)
Blue background indicates that the domain is not in the aligned region.

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