DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pkd2 and Pkd2l1

DIOPT Version :9

Sequence 1:NP_609561.2 Gene:Pkd2 / 34651 FlyBaseID:FBgn0041195 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_038964804.1 Gene:Pkd2l1 / 293937 RGDID:1306261 Length:763 Species:Rattus norvegicus


Alignment Length:896 Identity:250/896 - (27%)
Similarity:379/896 - (42%) Gaps:235/896 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 SPRPSLRDPGQSTSDKPSTSDKPSTSDKPSTSARTTVREPGPSSSPSRPVSTRESGRITFQEAAP 159
            |....|:..|....|.|:.|..||                 |:.:|          ||       
  Rat     7 SKEQELQTLGSRVWDNPAYSSPPS-----------------PNGTP----------RI------- 37

  Fly   160 STSAKVVKLAASEPRPAKPPEKEGFSLFKRKKKSVGSSTPPSP--------SRGHRAPSIIAASA 216
               ..|..:|..|.:|.||.       .:|::|     ||..|        .||.|.   :..:.
  Rat    38 ---CTVSSVALPETQPKKPE-------VRRQEK-----TPRVPVSGCCLLICRGIRG---LWGTT 84

  Fly   217 LQNRAKTNRILYTTDEEVREALVEFSVFIIFLILTSLVVLSVRHTYMFYFNDTMKKLFTNREMVV 281
            |......||.||     |:..|.|..|:|:||:...|:...:..:..:|:...|.:||.:     
  Rat    85 LTENTAENRELY-----VKTTLRELVVYIVFLVDVCLLTYGMTSSSAYYYTKVMSELFLH----- 139

  Fly   282 APSVT-VGFEKLITVPDWWDYLKYNFLVTLHGDLTFMDDAQANLTSMPPEGSEQGSEQGSEQGSE 345
            .||.: |.|:.:.::.|:||:                                            
  Rat   140 TPSESAVSFQTISSMSDFWDF-------------------------------------------- 160

  Fly   346 QSPEEVVGEAPEEAPEMDRLQEDFKYNGNPYIDLRGHRRAKRQSGVDGNSEDGSEDVSGNYLKDD 410
                       .:.|.:|.|.....||                     |...||...|..|    
  Rat   161 -----------AQGPLLDSLYWTKWYN---------------------NQSLGSSSHSFIY---- 189

  Fly   411 SDSIQANMSFHHLEGRVFLYENLLLGPPRLRQIRVRKESCYVNDAFIRYFNTCYAAYSSGAEDRK 475
                               |||||||.|||||:|||.:||.|::.|......||..||...||:.
  Rat   190 -------------------YENLLLGVPRLRQLRVRNDSCVVHEDFREDILNCYDVYSPDKEDQL 235

  Fly   476 PMH--KGS--PFRTMHDLDSTPIWTVLAFYRTGGYTVNLDYDKDRNVKIINDLKDIHWLDRGSRL 536
            |..  .|:  .:.:.::|..:..|..|..|..|||.::|...:..:.:.:..|::..|||||:|:
  Rat   236 PFGPLNGTAWTYHSQNELGGSSHWGRLTSYSGGGYYLDLPGSRQASAEALQGLQEGLWLDRGTRV 300

  Fly   537 CLVEFNLFNENTDIFQSIKLIAEIPPTGGVIPQAHLQTVKMYSFFTDRSMLMTVIYIFWYIMVIY 601
            ..::|:::|.|.::|..::|:.|.|.|||.||...::|||:..:..:....:....:.:.|.:.|
  Rat   301 VFIDFSVYNANINLFCILRLVVEFPATGGAIPSWQIRTVKLIRYVNNWDFFIVGCEVIFCIFIFY 365

  Fly   602 YTIYEITEIRKSGIKIYFCSMLNILDCAILLGCYLALVYNIWHSFKVMSLTAR-AHSDVTYQSLD 665
            |.:.||.|||....: |..|:.||||..::|...:|:.::::.:.:|..|... .....||...:
  Rat   366 YVVEEILEIRVHRFR-YLSSVWNILDLVVILLSIVAVGFHVFRTLEVNRLMGELLQQPDTYPDFE 429

  Fly   666 VLCFWNIIYVDMMAILAFLVWIKIFKFISFNKTLVQFTTTLKRCSKDLAGFSLMFGIVFLAYAQL 730
            .|.||...|.:|.|:..|..||||||:||||||:.|.::||.||:||:.||::||.|||.|||||
  Rat   430 FLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAIMFFIVFFAYAQL 494

  Fly   731 GLLLFGTKHPDFRNFITSILTMIRMILGDFQYNLIEQANRVLGPIYFLTYILLVFFILLNMFLAI 795
            |.|||||:...|..|:..|.|..|:|||||.||.|:.|||:|||:||:||:..|||:||||||||
  Rat   495 GYLLFGTQVESFSTFVKCIFTQFRIILGDFDYNAIDNANRILGPVYFITYVFFVFFVLLNMFLAI 559

  Fly   796 IMETYNTVKGEITQGRSHL-------GSY----------------IYRKLSG------------M 825
            |.:||:.||.|:...|..|       .||                :.:.|.|            .
  Rat   560 INDTYSEVKEELAGQRDQLQLSDLLKQSYSKTLQRLRLRKERVSDVQKVLKGGEPEIQFEDFTNT 624

  Fly   826 LYWITHCGRKRRHHPQASETEDKDAEH-----DVGAAHDETHEIRKNMTPAEQQYFKDI---PQG 882
            |..:.|..|:......|....|:|.:|     |.........|.|..::...:...:.:   |.|
  Rat   625 LRELGHAEREISEVSAAFTRFDRDGDHILDEEDQAQMRQGLEEERMTLSAETENLGRSVGHSPPG 689

  Fly   883 E-------------NQDMVRLNNRVGLLEEILEKLINNMDDI---LKRVEK 917
            |             .::...|..||..|:.:||.:::.:|.:   ||.:|:
  Rat   690 ELDAEAARGRSWVSGEEFDMLTRRVLQLQRVLEGVVSQVDALSSKLKMLER 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pkd2NP_609561.2 PKD_channel 402..803 CDD:285288 160/405 (40%)
Pkd2l1XP_038964804.1 PKD_channel 147..567 CDD:400395 172/519 (33%)
Smc <557..>743 CDD:224117 38/184 (21%)
Fer4_24 702..735 CDD:407943 7/32 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 313 1.000 Domainoid score I1256
eggNOG 1 0.900 - - E1_KOG3599
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 356 1.000 Inparanoid score I2162
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D205541at33208
OrthoFinder 1 1.000 - - FOG0002518
OrthoInspector 1 1.000 - - otm44805
orthoMCL 1 0.900 - - OOG6_103020
Panther 1 1.100 - - LDO PTHR10877
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1653
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.870

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