DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkd2 and pkd1l2b

DIOPT Version :9

Sequence 1:NP_609561.2 Gene:Pkd2 / 34651 FlyBaseID:FBgn0041195 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_021333711.1 Gene:pkd1l2b / 100537993 ZFINID:ZDB-GENE-141222-87 Length:1901 Species:Danio rerio


Alignment Length:451 Identity:117/451 - (25%)
Similarity:203/451 - (45%) Gaps:65/451 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   398 GSEDVSGNYL---------KDDSDSIQANMSFHHLEGRVFLYENL--------------LLGPPR 439
            |.:|.:..||         |..|||::.|..|  :.....|.:||              |:|..|
Zfish  1419 GQQDPNAFYLTQHIQQSFSKGISDSMKTNDVF--VWANTVLLKNLFGQYPGFITDGNSKLVGNAR 1481

  Fly   440 LRQIRVRKESCYVNDAFIRYFNTCYAAYSSGAEDRKPMHKG----------------SPFRTMHD 488
            :||:||:|::|.|....:...:.|...||.|.||......|                ..:::...
Zfish  1482 IRQVRVKKDTCKVAKVMLHTVSQCNTPYSWGNEDMMSYGPGWEEFNSVNGSEEGITAWQYQSQST 1546

  Fly   489 LDSTPIWTVLAFYRTGGYTVNLDYDKDRNVKIINDLKDIHWLDRGSRLCLVEFNLFNENTDIFQS 553
            |.:.|:|.:.|.||.|||.::|..||......:..|.:..|||..:|...|||.::|.|.|:|..
Zfish  1547 LKALPVWGLTALYRGGGYVMDLGPDKQNATMKLQYLFNSTWLDEYTRAVFVEFTVYNANVDLFCI 1611

  Fly   554 IKLIAEIPPTGGVIPQAHLQTVKMYS---FFTDRSMLMTVIYIFWYIMVIYYTIYEITEIRKSGI 615
            :.||.|....|....::.||.|.:||   .|....|...|||   ::.|:||...: .::.|...
Zfish  1612 VTLILESSAVGAFQFRSVLQNVSLYSSVGSFMSFLMASRVIY---FLFVVYYMFLQ-GKLLKRQK 1672

  Fly   616 KIYFCSMLNILDCAILLGCYLALVYNIWHSFKV-MSLTARAHSDVTY---QSLDVLCFWNIIYVD 676
            ..||.:..|:||.||::   |:     |.|..: :..|.:.:.|:.|   .......|.:...||
Zfish  1673 WAYFRNKWNLLDMAIII---LS-----WSSLSLFIQKTVQGNIDIQYYQKHKNQFPSFHDTAAVD 1729

  Fly   677 -----MMAILAFLVWIKIFKFISFNKTLVQFTTTLKRCSKDLAGFSLMFGIVFLAYAQLGLLLFG 736
                 :||.|..|..:|::..:..:..|....::|:|...|::..:::..|:.|||:....|:||
Zfish  1730 ATLRYVMAFLVLLGCVKLWHLLRLSPKLYVIASSLQRAWDDMSTLTVVIFIILLAYSLACNLIFG 1794

  Fly   737 TKHPDFRNFITSILTMIRMILGDFQYNLIEQANRVLGPIYFLTYILLVFFILLNMFLAIIM 797
            .:...:|....:...:..:.:|.|.|:.:..:|..||.:...:.:|:..|::|::|::||:
Zfish  1795 WELYTYRTLPDAFTAIFSLQIGIFNYDEVMNSNPALGAVIISSCVLIATFVVLSLFISIIL 1855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pkd2NP_609561.2 PKD_channel 402..803 CDD:285288 115/447 (26%)
pkd1l2bXP_021333711.1 CLECT 33..150 CDD:153057
Gal_Lectin 164..245 CDD:307994
GPS 759..798 CDD:307782
PLAT_polycystin 869..988 CDD:238850
PKD_channel 1437..1860 CDD:332708 113/433 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586385
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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