DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pkd2 and pkd1l2

DIOPT Version :10

Sequence 1:NP_609561.2 Gene:Pkd2 / 34651 FlyBaseID:FBgn0041195 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_031756633.1 Gene:pkd1l2 / 100486136 XenbaseID:XB-GENE-968335 Length:2458 Species:Xenopus tropicalis


Alignment Length:692 Identity:157/692 - (22%)
Similarity:260/692 - (37%) Gaps:218/692 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 STP--PSPSRGHRAPSIIAASALQ---NRAKTNRILYTTDEEVREALVEFSVFIIFLILTSLVVL 256
            |||  |:|..|.|..|.|......   .:.|.|   |..:::|...:.|...::.||.:..||..
 Frog  1906 STPGDPNPLLGSRRDSNIYQPPPPTDITKMKNN---YMKEQKVFALIREILAYLGFLWMLLLVAY 1967

  Fly   257 SVRHTYMFYFNDTMKKLFTNREMVVAPSVTVGFEKLITVPDWWDYLKYNFLVTLHGDLTFMDDAQ 321
            ..|....:|.|..::..||:           |||.|.:..:::.:.....:..|:          
 Frog  1968 GQRDPNSYYLNKHIESSFTD-----------GFEDLCSYQEFFTWANTTLINNLY---------- 2011

  Fly   322 ANLTSMPPEGSEQGSEQGSEQGSEQSPEEVVGEAPEEAPEMDRLQEDFKYNGNPYIDLRGHRRAK 386
                             ||..|                                :|         
 Frog  2012 -----------------GSHPG--------------------------------FI--------- 2018

  Fly   387 RQSGVDGNSEDGSEDVSGNYLKDDSDSIQANMSFHHLEGRVFLYENLLLGPPRLRQIRVRKESCY 451
                .||||:                                     |:|..|:||||::|:||.
 Frog  2019 ----TDGNSK-------------------------------------LVGGARMRQIRIKKDSCP 2042

  Fly   452 VNDAFIRYFNTCYAAYSSGAED-------------RKPMHKGSP--FRTMHDLDSTPIWTVLAFY 501
            |........:.|.|.||..||:             .......||  ::....|...|.|..||.|
 Frog  2043 VASVLQSTIDNCRAPYSLDAEEMGHYDGSWNFSAITNATDVNSPWYYQNHSKLRGHPTWGKLATY 2107

  Fly   502 RTGGYTVNLDYDKDRNVKIINDLKDIHWLDRGSRLCLVEFNLFNENTDIFQSIKLIAEIPPTGGV 566
            |.|||..:|..::....:::.||....|||..:|...|||.::|.|.::|..:||:.|....|..
 Frog  2108 RGGGYVADLGNERKYAHRVLQDLFSNIWLDSYTRAVFVEFTVYNANVNLFCIVKLMFETNALGTF 2172

  Fly   567 IPQAHLQTVKMYSFFTDRSMLMTVIYIFWYIMVIYYTIYEITEIR--KSGIKIYFCSMLNILDCA 629
            ..:|:||:|::|.|.....:.:....:.:::.||||.:.:...::  |.|   ||.|..|:|:.|
 Frog  2173 FTRANLQSVRLYPFTDGLHIFVVAAEVIYFLFVIYYMVVQGKRMKAEKWG---YFRSKWNLLELA 2234

  Fly   630 ILLGCYLAL-VY------------------NIWHSFKVMSLTARAHSDVTYQSLDVLCFWNIIYV 675
            :::..:.|| ||                  |.:.||   :.||.|.:.:.|              
 Frog  2235 LIIISWSALSVYVKRTILGTRDLRYYQEHKNEFVSF---NETAAADAALGY-------------- 2282

  Fly   676 DMMAILAFLVWIKIFKFISFNKTLVQFTTTLKRCSKDLAGFSLMFGIVFLAYAQLGLLLFGTKHP 740
             ::|.|..|..||::..:..|..|...|.||:|...|::||..:..|:||||:....|:||.|..
 Frog  2283 -LIAFLVLLSTIKLWHLLRLNPKLNMITATLRRAWGDISGFITVIVIMFLAYSIACNLIFGWKLN 2346

  Fly   741 DFRNFITSILTMIRMILGDFQYNLIEQANRVLGPIYFLTYILLVFFILLNMFLAIIMETYNTVKG 805
            .::....|..||:.:.||.|.|..:...|.|||.....:.|:.:.|::||:|:::|:..::    
 Frog  2347 SYKTVFDSAKTMVSLQLGIFNYEEVLDYNPVLGSFLVGSCIIFMTFVVLNLFISVILVAFS---- 2407

  Fly   806 EITQGRSHLGSYIYRKLSGMLYWITHCGRKRRHHPQASETED 847
                                        .:::|| |||:.|:
 Frog  2408 ----------------------------EEQKHH-QASDEEE 2420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pkd2NP_609561.2 DUF5585 <29..272 CDD:465521 21/79 (27%)
Polycystin_dom 404..578 CDD:466668 50/188 (27%)
PKD_channel 579..803 CDD:462341 64/244 (26%)
pkd1l2XP_031756633.1 CLECT 22..147 CDD:214480
Gal_Rha_Lectin_PKD1L2 151..245 CDD:438688
REJ <615..890 CDD:366875
GPS 1276..1314 CDD:460350
PLAT_polycystin 1385..1504 CDD:238850
Polycystin_dom 1988..2184 CDD:466668 63/304 (21%)
PKD_channel 2186..2408 CDD:462341 64/274 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.