DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkd2 and Pkd1l3

DIOPT Version :10

Sequence 1:NP_609561.2 Gene:Pkd2 / 34651 FlyBaseID:FBgn0041195 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_038954217.1 Gene:Pkd1l3 / 100362565 RGDID:2324490 Length:2183 Species:Rattus norvegicus


Alignment Length:685 Identity:141/685 - (20%)
Similarity:257/685 - (37%) Gaps:193/685 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 HRAPSIIA------ASALQNRAKTNRILYT----------TDEEVREALVEFS----VFIIFLIL 250
            |.|..|:|      :||...|.|.|.| ||          |.:..|:.|...:    |.|:||.|
  Rat  1598 HHARRIVALWAKCPSSAPGLRDKNNPI-YTAPAMNHLDRRTKKVWRKRLFLLTAGSLVQILFLTL 1661

  Fly   251 TSLVVLSVRHTYMFYFNDTMKKLFTNREMVVAPSVTVGFEKLITVPDWWDYLKYNFLVTLHGDLT 315
            ....|.|.:.:..|:.:..:.|.|::           ||.::..|.|::.:              
  Rat  1662 LMTTVYSAKDSSRFFLHRAVWKRFSH-----------GFSEIKAVEDFYPW-------------- 1701

  Fly   316 FMDDAQANLTSMPPEGSEQGSEQGSEQGSEQSPEEVVGEAPEEAPEMDRLQEDFKYNGNPYIDLR 380
                  ||.|.:|                                             |.|.|.|
  Rat  1702 ------ANRTLLP---------------------------------------------NLYGDYR 1715

  Fly   381 GHRRAKRQSGVDGNSEDGSEDVSGNYLKDDSDSIQANMSFHHLEGRVFLYENLLLGPPRLRQIRV 445
            |..       .||||                                ||..|:|     |||||:
  Rat  1716 GFI-------TDGNS--------------------------------FLLGNVL-----LRQIRI 1736

  Fly   446 RKESCYVNDAFIRYFNTCYAAYSSGAEDRKPMHKG--SP------------FRTMHDLDSTPIWT 496
            ..:: :...:...:.|    :|....|||:....|  .|            :::...|...||..
  Rat  1737 PNDT-HSPVSLHEHMN----SYPQHQEDRENYGAGWVPPDTNITKADSIWHYQSPESLGGYPIQG 1796

  Fly   497 VLAFYRTGGYTVNLDYDKDRNVKIINDLKDIHWLDRGSRLCLVEFNLFNENTDIFQSIKLIAEIP 561
            .:..|..|||.|.|..:.....:::..|:..||||..::...|||.:||.|.::...:.||.|..
  Rat  1797 EVTTYSGGGYVVRLGRNHSAATRVLQHLEQRHWLDHYTKALFVEFTVFNANVNLLCMVTLILESS 1861

  Fly   562 PTGGVIPQAHLQTVKMYSFFTDRSMLMTVIYIFWYIMVIYYTIYEITEIRKSGIKIYFCSMLNIL 626
            ..|.......|.::.... .::|.....:..:.:|::|.||...:...:::.|: .:|....|||
  Rat  1862 GVGTFFTSLRLDSLTSLQ-SSERGFAWIISQVAYYLLVCYYAFVQGCRLKRQGL-AFFTRRRNIL 1924

  Fly   627 DCAILLGCYLALVYNIWHSFKVMSLTARA----HSDVTYQSLDVLCF--------WNIIYVDMMA 679
            |.:|:|           .||.::.|..::    |:::.....|...|        .|.:...:|.
  Rat  1925 DTSIIL-----------TSFSILGLNMQSLSLLHTNMQQYRRDPDGFISFSEALRVNSVATHLMG 1978

  Fly   680 ILAFLVWIKIFKFISFNKTLVQFTTTLKRCSKDLAGFSLMFGIVFLAYAQLGLLLFGTKHPDFRN 744
            .|.....::::..:..:..|.....||.:...::.||.::..|:..:||....||||....|:::
  Rat  1979 FLLLFATVRVWDLLRHHARLQVINKTLTKAWDEVLGFIMIIMILLSSYAMTFNLLFGWSISDYQS 2043

  Fly   745 FITSILTMIRMILGDFQYNLIEQANRVLGPIYFLTYILLVFFILLNMFLAIIMETYNTVKGEITQ 809
            |.:|::|::.:::|..::..:...:.|||....|:.|:|:..:::|:|::.|:..:...: :..:
  Rat  2044 FFSSVVTVVGLLVGIPKHKEVVALSPVLGSFLVLSNIILMGLVIINLFVSAILIVFGKER-KACE 2107

  Fly   810 GRSHLGSYIYRKLSGMLYWITHCGRKRRHHPQASE 844
            ..:.|...:.:|||.:|       ..|:|...|||
  Rat  2108 KEATLTDMLLQKLSSLL-------GIRQHQKPASE 2135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pkd2NP_609561.2 DUF5585 <29..272 CDD:465521 23/85 (27%)
Polycystin_dom 404..578 CDD:466668 41/187 (22%)
PKD_channel 579..803 CDD:462341 48/235 (20%)
Pkd1l3XP_038954217.1 CLECT 37..144 CDD:153057
Herpes_BLLF1 <215..601 CDD:282904
GPS 1002..1040 CDD:460350
PLAT_polycystin 1111..1230 CDD:238850
Polycystin_dom 1688..1874 CDD:466668 58/299 (19%)
PKD_channel 1879..2096 CDD:462341 47/229 (21%)
Blue background indicates that the domain is not in the aligned region.

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