DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru1 and AT2G47310

DIOPT Version :9

Sequence 1:NP_001260403.1 Gene:bru1 / 34648 FlyBaseID:FBgn0000114 Length:810 Species:Drosophila melanogaster
Sequence 2:NP_850472.1 Gene:AT2G47310 / 819344 AraportID:AT2G47310 Length:512 Species:Arabidopsis thaliana


Alignment Length:407 Identity:97/407 - (23%)
Similarity:162/407 - (39%) Gaps:105/407 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 ATNSLPNSP-----IHSNNNNPSLLNNNNNNSNGTSSNNSLNVG------NNN-----SNPSLGG 293
            |.|:.|.:|     .|:|.|||.   ::..:......::...||      |:|     :.|...|
plant     5 APNAFPGAPPPVPYYHNNYNNPP---HHQIHPPPPPHHHIAAVGFHKYPQNDNRDQRFNQPHYSG 66

  Fly   294 SNSNALVSVGSNGIMSAAGLVNNNN-------NPCSAN----RNVVAMVDDDACFRLDTDATVTY 347
            ...|.:|.             .:||       :||..:    |...:..|       :.|.::. 
plant    67 QQQNMIVD-------------QSNNAPPPFPPSPCGGSSLRKRRSQSATD-------NADGSIA- 110

  Fly   348 GEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAAL 412
                      |::|..:.|:..|..:|::||:||.|..|.:.:||.||.....||:.:.......
plant   111 ----------KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGN 165

  Fly   413 KAQDALHNVKTLNGMYHPIQMKPADSENR----------NERKLFVGMLNKKLNENDVRKLFEVH 467
            .|..||....|..|...|::::.|::|..          :..||:|..|||:..:.:|.::|..:
plant   166 AAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFSRY 230

  Fly   468 GAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKEKEQK 532
            |.||:..:..|.....:|.|||.|:.|..|::||| .|:....:.|...||:|:|||.:|.:   
plant   231 GIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIK-ALNGLFTIRGSDQPLIVRFADPKKPR--- 291

  Fly   533 KIQQIQANLWNLASNINIPLGQTATSVTTP-----ILPNPPQQPSPVLGADAITPASIQLLQ--- 589
                               ||:..::..||     ..||...||.|..  :...||..:::|   
plant   292 -------------------LGEQRSTFNTPPAMQHFDPNWHSQPYPQW--ENKEPAPPRVVQHHD 335

  Fly   590 -QLQAVGLQHQLLQALT 605
             ..|.....||..||::
plant   336 FSSQPNHFPHQNTQAVS 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru1NP_001260403.1 RRM1_CELF1_2_Bruno 356..437 CDD:241075 23/80 (29%)
ELAV_HUD_SF 359..808 CDD:273741 72/266 (27%)
RRM2_Bruno_like 443..524 CDD:241080 28/80 (35%)
RRM3_Bruno_like 722..800 CDD:241084
AT2G47310NP_850472.1 RRM_SF 111..190 CDD:418427 23/78 (29%)
RRM_SF 208..287 CDD:418427 29/79 (37%)
WW 406..432 CDD:395320
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 62 1.000 Domainoid score I3741
eggNOG 1 0.900 - - E1_KOG0144
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.