DRSC/TRiP Functional Genomics Resources

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Protein Alignment bru1 and celf4

DIOPT Version :10

Sequence 1:NP_723737.1 Gene:bru1 / 34648 FlyBaseID:FBgn0000114 Length:810 Species:Drosophila melanogaster
Sequence 2:XP_031757481.1 Gene:celf4 / 779831 XenbaseID:XB-GENE-5873699 Length:488 Species:Xenopus tropicalis


Alignment Length:580 Identity:232/580 - (40%)
Similarity:303/580 - (52%) Gaps:140/580 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 SNGTSSNNSLNVGNNNSNPSLGGSNSNALVSVGSNGIMSAAGLVNNNNNPCSANRNVVAMVDDDA 335
            :||...|:||     :|||:  |.         .||:..:.|           ....:.|.|.||
 Frog     9 ANGQPDNSSL-----SSNPT--GH---------MNGLTHSPG-----------GAATIPMKDHDA 46

  Fly   336 CFRLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGC 400
                                 ||:|:||:|:::||..|:.:|||:|.::.:.||:|:.||:.|||
 Frog    47 ---------------------IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGC 90

  Fly   401 CFVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRNE-RKLFVGMLNKKLNENDVRKLF 464
            .|:|:..|.:|||||.|||..|||.||..|||:||||||:|.| ||||||||||:.:|:|||:||
 Frog    91 AFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLF 155

  Fly   465 EVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKEK 529
            |..|.|||||:||..:|.|||||||.::: ||...|....|..::.|.|.:|.||||||||.||:
 Frog   156 EAFGNIEECTILRGPDGNSKGCAFVKYSS-HAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 219

  Fly   530 EQKKIQQI--QANLWNLASNINIPLGQTATSVTTPILPNPPQQPSPVLGADAITPASIQLLQQLQ 592
            ..:::||:  |..::|                                      |.:||.     
 Frog   220 TMRRMQQMAGQMGMFN--------------------------------------PMAIQF----- 241

  Fly   593 AVGLQHQLLQALTGLGAQQSSSATDTSAVAAAGLLTPMTVQNLAAIAAMTQPSLSNAAAAAAAAT 657
              |......|||      ....|...::||..|.|.||.....|.:..|...:::..|||....|
 Frog   242 --GAYGAYAQAL------MQQQAAIMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPT 298

  Fly   658 SPGSAQLTNTAALLWSDPNPM---------ASAYMSTAA------GLPQFGSASALSTSPL---- 703
            |.||.....||..:.|.|:|:         |.|....||      |:..:.:.|..:..||    
 Frog   299 SGGSTPPGITAPAVPSIPSPIGVNGFTGIPAQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAY 363

  Fly   704 ASVALSAAAA--AAAG---------------KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGN 751
            |.|...|..|  ||.|               :|.|||||||||||||||||.|.:|...||||||
 Frog   364 AGVQQYAGPAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGN 428

  Fly   752 VISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKKPKD-SKPY 810
            |||:|||:|:.|:.||||||||||||.|||.||:||||||:|.||||||||:||| ::||
 Frog   429 VISSKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru1NP_723737.1 RRM1_CELF1_2_Bruno 356..437 CDD:410040 42/80 (53%)
SF-CC1 <435..789 CDD:273721 157/392 (40%)
RRM_SF 443..524 CDD:473069 46/81 (57%)
RRM3_Bruno_like 722..800 CDD:241084 60/77 (78%)
celf4XP_031757481.1 RRM1_CELF3_4_5_6 42..128 CDD:410041 46/106 (43%)
RRM2_CELF3_4_5_6 134..214 CDD:410043 45/80 (56%)
RRM3_CELF3_4_5_6 399..477 CDD:241083 60/77 (78%)

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