DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru1 and celf1

DIOPT Version :9

Sequence 1:NP_001260403.1 Gene:bru1 / 34648 FlyBaseID:FBgn0000114 Length:810 Species:Drosophila melanogaster
Sequence 2:XP_012816629.1 Gene:celf1 / 549906 XenbaseID:XB-GENE-854036 Length:534 Species:Xenopus tropicalis


Alignment Length:577 Identity:266/577 - (46%)
Similarity:327/577 - (56%) Gaps:146/577 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHS 385
            ||.|.:.|:.         ..:.|:.:.: .||||:|||||||||:|..|.:|||:||:||||:.
 Frog    17 CSLNSSPVSK---------KMNGTMDHPD-HPDPDSIKMFVGQVPRSWSEKELRELFEQYGAVYE 71

  Fly   386 INVLRDKATG--ISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRN------ 442
            ||||||::..  .||||||:|||||.|||:||:||||:|.|.||:|||||||||||..|      
 Frog    72 INVLRDRSQNPPQSKGCCFITFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNGGLNTV 136

  Fly   443 ----------ERKLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAA 497
                      :|||||||::||.||||:|.:|...|.|||..:||..:|.|:|||||||.|:..|
 Frog   137 LYPEHPASVEDRKLFVGMVSKKCNENDIRAMFSQFGQIEESRILRGPDGMSRGCAFVTFTTRSMA 201

  Fly   498 ISAIKVTLSQNKIMEGCTSPLVVKFADTQKEKEQKKI-QQIQ--------ANLW-NLASNINIPL 552
            ..||| .:.|.:.||||:||:|||||||||:||||:: ||:|        |::| |||       
 Frog   202 QMAIK-AMHQAQTMEGCSSPIVVKFADTQKDKEQKRMTQQLQQQMQQLNAASMWGNLA------- 258

  Fly   553 GQTATSVTTPILPNPPQQPSPVLGADAITP----ASIQLLQQLQAVGLQHQLLQALTGLGAQQSS 613
                                   |..::.|    ..:|||||..:.|    .|.:|:||......
 Frog   259 -----------------------GLSSLAPQYLALYLQLLQQTASSG----NLNSLSGLHPMGGE 296

  Fly   614 SATD-TSAVAAAGLLTPMTVQNLAAIAAMTQPSLSNAAAAAAAATSPGSAQLTNTAAL-----LW 672
            .||. ||.      |..|.:|||||:||        ||:||....|.|||..|:::.|     ..
 Frog   297 YATGMTSG------LNAMQLQNLAALAA--------AASAAQNTPSAGSALTTSSSPLSILTSSG 347

  Fly   673 SDP--------NPMAS-AYMSTAAGLP---QFGSASAL----------------STSPLASVALS 709
            |.|        ||||| ..:.|.||..   ..||.:.:                ||....|.|.|
 Frog   348 SSPSSNNNSAVNPMASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSLSNGTGSTMEALSQAYS 412

  Fly   710 -----AAAA---------------AAAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVIS 754
                 ||||               .|||.|.|||||.|||||||||||.|.||...|:|||||:|
 Frog   413 GIQQYAAAALPSLYNQSLLSQQGLGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 477

  Fly   755 AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKKPK-DSKPY 810
            |||||||||:|||||||||:|||.|||.||::|||||:|.||||||||:.| |||||
 Frog   478 AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru1NP_001260403.1 RRM1_CELF1_2_Bruno 356..437 CDD:241075 57/82 (70%)
ELAV_HUD_SF 359..808 CDD:273741 251/535 (47%)
RRM2_Bruno_like 443..524 CDD:241080 46/80 (58%)
RRM3_Bruno_like 722..800 CDD:241084 61/77 (79%)
celf1XP_012816629.1 RRM1_CELF1_2_Bruno 42..125 CDD:241075 57/82 (70%)
ELAV_HUD_SF 45..529 CDD:273741 249/532 (47%)
RRM2_CELF1_2 147..227 CDD:241078 46/80 (58%)
RRM3_CELF1_2 442..533 CDD:241082 70/90 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 96 1.000 Domainoid score I7190
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 405 1.000 Inparanoid score I1854
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 1 1.000 - - otm48626
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2990
SonicParanoid 1 1.000 - - X208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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