DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru1 and Celf1

DIOPT Version :9

Sequence 1:NP_001260403.1 Gene:bru1 / 34648 FlyBaseID:FBgn0000114 Length:810 Species:Drosophila melanogaster
Sequence 2:XP_038961339.1 Gene:Celf1 / 362160 RGDID:1307721 Length:514 Species:Rattus norvegicus


Alignment Length:562 Identity:255/562 - (45%)
Similarity:321/562 - (57%) Gaps:136/562 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHS 385
            ||.|.:.|:.         ..:.|:.:.: :||.|.|||||||||::..|..|||:||:||||:.
  Rat    17 CSLNSSPVSK---------KMNGTLDHPD-QPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYE 71

  Fly   386 INVLRDKATG--ISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRN---ERK 445
            ||:|||::..  .||||||||||||.|||:||:||||:|.|.||:|||||||||||..|   :||
  Rat    72 INILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRK 136

  Fly   446 LFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKI 510
            ||:||::||..|||:|.:|...|.||||.:||..:|.|:|||||||.|:..|.:||| .:.|.:.
  Rat   137 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIK-AMHQAQT 200

  Fly   511 MEGCTSPLVVKFADTQKEKEQKKI-QQIQ--------ANLW-NLASNINIPLGQTATSVTTPILP 565
            ||||:||:|||||||||:||||:: ||:|        |::| |||                    
  Rat   201 MEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLA-------------------- 245

  Fly   566 NPPQQPSPVLGADAITPASIQLLQQLQAVGLQHQLLQALTGLGAQQSSSATDTSAVAAAGLLTPM 630
                      |.:.:.|         |.:.|..||||.     ...|.:....|::...|.|..|
  Rat   246 ----------GLNTLGP---------QYLALYLQLLQQ-----TANSGNLNTLSSLHPMGGLNAM 286

  Fly   631 TVQNLAAIAAMTQPSLSNAAAAAAAATSPGSAQLTNTAALL-------WSDP--------NPMAS 680
            .:|||||:|         |||:||..|..|:..||.:::.|       .|.|        ||:||
  Rat   287 QLQNLAALA---------AAASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIAS 342

  Fly   681 -AYMSTAAGLP---QFGS------------ASALS----------TSPLASVALSAAAA------ 713
             ..:.|.||..   ..||            :|.||          |...:.:...||||      
  Rat   343 LGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYN 407

  Fly   714 ---------AAAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCF 769
                     .|||.|.|||||.|||||||||||.|.||...|:|||||:||||||||||:|||||
  Rat   408 QNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF 472

  Fly   770 GFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKKPK-DSKPY 810
            ||||:|||.|||.||::|||||:|.||||||||:.| |||||
  Rat   473 GFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru1NP_001260403.1 RRM1_CELF1_2_Bruno 356..437 CDD:241075 56/82 (68%)
ELAV_HUD_SF 359..808 CDD:273741 241/520 (46%)
RRM2_Bruno_like 443..524 CDD:241080 45/80 (56%)
RRM3_Bruno_like 722..800 CDD:241084 61/77 (79%)
Celf1XP_038961339.1 RRM1_CELF1_2_Bruno 42..125 CDD:410040 56/82 (68%)
RRM2_CELF1_2 134..214 CDD:410042 45/80 (56%)
RRM3_CELF1_2 422..513 CDD:241082 70/90 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340071
Domainoid 1 1.000 97 1.000 Domainoid score I7060
eggNOG 1 0.900 - - E1_KOG0144
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 405 1.000 Inparanoid score I1842
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 1 1.000 - - otm45534
orthoMCL 1 0.900 - - OOG6_106127
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.760

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