DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru1 and SPAC328.05

DIOPT Version :9

Sequence 1:NP_001260403.1 Gene:bru1 / 34648 FlyBaseID:FBgn0000114 Length:810 Species:Drosophila melanogaster
Sequence 2:NP_594207.3 Gene:SPAC328.05 / 2542567 PomBaseID:SPAC328.05 Length:464 Species:Schizosaccharomyces pombe


Alignment Length:559 Identity:99/559 - (17%)
Similarity:174/559 - (31%) Gaps:209/559 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 NNNNNSNGTSSNNSLNVGNNNSNPSLGGSNSNALVSVGSNGIMSAAGLVNNNNNPCSANRNVVAM 330
            |..::..|:..:.|.::.:::||.....|.|......|||.:  ..||..:..:           
pombe     8 NEFDSGMGSKLDVSSSLNSSSSNMDRDRSESPKRHVNGSNSL--KRGLHFDGEH----------- 59

  Fly   331 VDDDACFRLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATG 395
                    .:.|..:..|:|....:. :::||.:...:...:|:|...:.|.|.:..:| :...|
pombe    60 --------TERDPHLGNGQKYTQQER-RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNG 114

  Fly   396 ISKGCCFVTFYTRHAALKAQDALHNVKTL------------NGMYHPIQMKPADSEN----RNER 444
            :||||..:.:.|...|..|...|.|.|.:            |..:....:.|:.|.|    ..:|
pombe   115 LSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDR 179

  Fly   445 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNK 509
            :||||.|...:...|::.||...|::....:..:|.|:|:|...|..::...|:.|         
pombe   180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHA--------- 235

  Fly   510 IMEGCTSPLVVKFADTQKEKEQKKIQQIQANLWNLASNINIPLGQTATSVTTPILPNPPQQPSPV 574
                                                                             
pombe   236 ----------------------------------------------------------------- 235

  Fly   575 LGADAITPASIQLLQQLQAVGLQHQLLQALTGLGAQQSSSATDTSAVAAAGLLTPMTVQNLAAIA 639
                      ||:|.....:|   :.|:......|...|....|.                    
pombe   236 ----------IQMLHNTDFMG---RTLEVRLDRFAHHKSKPYSTH-------------------- 267

  Fly   640 AMTQPSLSNAAAAAAAATSPGSAQLTNTAALLWSDPNPMASAYMSTAAGLPQFGSASALSTSPLA 704
                         ....|.|...|:|.            :|.|      ||..|           
pombe   268 -------------GNGYTFPAEMQMTT------------SSTY------LPMLG----------- 290

  Fly   705 SVALSAAAAAAAGKQIE---------GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID 760
                       |..|:|         ||....:::.:||...:|.:|...|...|:||.|::..:
pombe   291 -----------ANTQVEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE 344

  Fly   761 KQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 799
             .|..||.||.|.|:|.:.|..:|:.:||::.|.:.|::
pombe   345 -PTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQL 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru1NP_001260403.1 RRM1_CELF1_2_Bruno 356..437 CDD:241075 20/92 (22%)
ELAV_HUD_SF 359..808 CDD:273741 84/466 (18%)
RRM2_Bruno_like 443..524 CDD:241080 17/80 (21%)
RRM3_Bruno_like 722..800 CDD:241084 25/78 (32%)
SPAC328.05NP_594207.3 RRM 71..387 CDD:223796 85/475 (18%)
RRM_SF 79..150 CDD:240668 18/71 (25%)
RRM3_hnRNPM_like 181..252 CDD:240833 21/157 (13%)
RRM_SF 312..385 CDD:302621 23/72 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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