DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru1 and celf5

DIOPT Version :10

Sequence 1:NP_723737.1 Gene:bru1 / 34648 FlyBaseID:FBgn0000114 Length:810 Species:Drosophila melanogaster
Sequence 2:NP_001090639.1 Gene:celf5 / 100036604 XenbaseID:XB-GENE-494002 Length:486 Species:Xenopus tropicalis


Alignment Length:497 Identity:208/497 - (41%)
Similarity:283/497 - (56%) Gaps:56/497 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 ACFRLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKG 399
            ||.....:......:...|.|.||:||||:|::::|..|:.:||::|.::.:.||:|:.||:.||
 Frog    25 ACPMSGPEPPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKG 89

  Fly   400 CCFVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENR-NERKLFVGMLNKKLNENDVRKL 463
            |.|:|:..|.:|:|||.|||..|||.||..|||:||||||:| .:||||||||:|:.:|.:|..:
 Frog    90 CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLSKQQSEEEVTSM 154

  Fly   464 FEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKE 528
            |:..|:||||:|||..:|.|||||||.|:: ||...|....|..::.|.|.:|.||||||||.||
 Frog   155 FQAFGSIEECSVLRGPDGSSKGCAFVKFSS-HAEAQAAIQALHGSQTMPGASSSLVVKFADTDKE 218

  Fly   529 KEQKKIQQIQANLWNLASNINIPLGQTATSVTTPILPNPP------QQPSPVLG---ADAITPAS 584
            :..:::||:...           ||....|:..||.|...      ||.:.||.   ...::| |
 Frog   219 RTLRRMQQMVGQ-----------LGIFTPSLALPISPYSAYAQALMQQQTTVLSTSHGSYLSP-S 271

  Fly   585 IQL----LQQLQAVGLQHQLLQALTGLGAQQSSSATDTSAVAAAGLLTPMT--VQNLAAIAAMTQ 643
            :..    :||:.||.|.......:|......|.....|:||  .||:.|:|  ...|....: :.
 Frog   272 VAFPSCHIQQIGAVNLNGLPAAPITPASGLHSPPVIGTAAV--PGLVAPLTNGFPGLVPFPS-SH 333

  Fly   644 PSLSNAAAAAAAATSPGSAQLTNTAALLWSDPNPMASAYMSTAAGLPQFGSASALS----TSPLA 704
            |:|...              .||:..     |.|..|..::..:..|.|......|    |:.|.
 Frog   334 PALDTI--------------YTNSIV-----PYPAQSPALTVESLHPSFTGVQQYSAIYPTAALT 379

  Fly   705 SVALSAAAAAAAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCF 769
            .|..|........:|.|||||||||||||||||.|.:|...||||||:||:|||:|:.|:.||||
 Frog   380 PVTHSTPQPPPILQQREGPEGCNLFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRATNQSKCF 444

  Fly   770 GFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKKPKD-SKPY 810
            ||||||||.|||.||:||||||:|.||||||||:||| ::||
 Frog   445 GFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKRPKDTTQPY 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru1NP_723737.1 RRM1_CELF1_2_Bruno 356..437 CDD:410040 40/80 (50%)
SF-CC1 <435..789 CDD:273721 147/373 (39%)
RRM_SF 443..524 CDD:473069 41/80 (51%)
RRM3_Bruno_like 722..800 CDD:241084 59/77 (77%)
celf5NP_001090639.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39 2/13 (15%)
RRM1_CELF3_4_5_6 42..128 CDD:410041 43/85 (51%)
PABP-1234 <49..374 CDD:130689 128/359 (36%)
RRM2_CELF3_4_5_6 134..214 CDD:410043 41/80 (51%)
RRM3_CELF3_4_5_6 397..475 CDD:241083 59/77 (77%)

Return to query results.
Submit another query.