DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab6 and RABH1d

DIOPT Version :9

Sequence 1:NP_001285869.1 Gene:Rab6 / 34636 FlyBaseID:FBgn0015797 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_179816.1 Gene:RABH1d / 816761 AraportID:AT2G22290 Length:207 Species:Arabidopsis thaliana


Alignment Length:203 Identity:149/203 - (73%)
Similarity:173/203 - (85%) Gaps:2/203 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 72
            :||.|:||||||:|||||||:|||||||.||.|||||||||||||||||||||||||||||||||
plant     5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69

  Fly    73 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST 137
            |||||||||||||:|||||||:.|..||..|||||::||.||..||||:||||||||.:|||||.
plant    70 RFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLVGNKTDLVEKRQVSI 134

  Fly   138 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPSEDMQEVVLKDSPNETK-D 201
            |||:.|.:|..|||||||||||:|:|.|||::|||||||:|..|..:|||.:|.||.:.|.:: |
plant   135 EEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTKNEDMVDVNLKPTSNSSQGD 199

  Fly   202 PEGG-CAC 208
            .:|| |:|
plant   200 QQGGACSC 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab6NP_001285869.1 Rab6 13..173 CDD:206654 127/159 (80%)
RABH1dNP_179816.1 Rab6 10..170 CDD:206654 127/159 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 272 1.000 Domainoid score I434
eggNOG 1 0.900 - - E1_KOG0094
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H134129
Inparanoid 1 1.050 305 1.000 Inparanoid score I757
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1277051at2759
OrthoFinder 1 1.000 - - FOG0000767
OrthoInspector 1 1.000 - - otm2567
orthoMCL 1 0.900 - - OOG6_100976
Panther 1 1.100 - - O PTHR24073
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X452
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.830

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