DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab6 and si:dkey-13a21.4

DIOPT Version :10

Sequence 1:NP_477172.1 Gene:Rab6 / 34636 FlyBaseID:FBgn0015797 Length:208 Species:Drosophila melanogaster
Sequence 2:XP_073771951.1 Gene:si:dkey-13a21.4 / 494576 ZFINID:ZDB-GENE-040724-163 Length:229 Species:Danio rerio


Alignment Length:195 Identity:70/195 - (35%)
Similarity:107/195 - (54%) Gaps:10/195 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL-QLWDTAGQERFRSL 77
            ||:.:|...|||:|.:|||:...|.|.|:||||:|||:|.:.::.|.|.| |:|||||.|||.||
Zfish    10 KLILIGNSGVGKSSFMTRFVDHRFTNLYRATIGVDFLTKEITVDRRPVILQQIWDTAGTERFHSL 74

  Fly    78 IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVI---IMLVGNKTDLSDKRQVSTE 138
            ..|..|.:...::|:|:|::.||.....|..:...:. .||..   .:::|||.|| |.|||||.
Zfish    75 GSSLYRGAQCCLLVFDVTSSVSFEALDVWKKEFLVQACPSDPAAFPFIVLGNKIDL-DHRQVSTS 138

  Fly   139 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPSEDMQEVVLKDSPNETKDPE 203
            :.::...::...:.|:|||....|.:.|...|.|...:..|..:    |:|.....:.|.|:..|
Zfish   139 KAQKWCVDIGAEYFESSAKEDIGVDKTFHSAARAALHLKVTMWR----MEETSRLQTHNRTRSKE 199

  Fly   204  203
            Zfish   200  199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab6NP_477172.1 Rab6 13..173 CDD:206654 63/163 (39%)
si:dkey-13a21.4XP_073771951.1 None

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