DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab6 and ryh1

DIOPT Version :9

Sequence 1:NP_001285869.1 Gene:Rab6 / 34636 FlyBaseID:FBgn0015797 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_593249.1 Gene:ryh1 / 2543529 PomBaseID:SPAC4C5.02c Length:201 Species:Schizosaccharomyces pombe


Alignment Length:206 Identity:152/206 - (73%)
Similarity:173/206 - (83%) Gaps:6/206 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 67
            |.::...||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
pombe     2 SENYSFSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66

  Fly    68 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 132
            ||||||||||||||||||:||::||||||.|||..|.|||:|||.|||.||||:||||||||:||
pombe    67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADK 131

  Fly   133 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPSEDMQEVVLKDSPN 197
            |||:.||||:|||||.:|.:|||||||:|||.|||::|..||||::.|.: |..|.:|.::  ||
pombe   132 RQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQ-STQMIDVSIQ--PN 193

  Fly   198 ETKDPEGGCAC 208
            |.   |..|.|
pombe   194 EN---ESSCNC 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab6NP_001285869.1 Rab6 13..173 CDD:206654 134/159 (84%)
ryh1NP_593249.1 Rab6 12..172 CDD:206654 134/159 (84%)
RAB 12..170 CDD:197555 133/157 (85%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 270 1.000 Domainoid score I333
eggNOG 1 0.900 - - E1_KOG0094
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 294 1.000 Inparanoid score I622
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000767
OrthoInspector 1 1.000 - - oto101982
orthoMCL 1 0.900 - - OOG6_100976
Panther 1 1.100 - - LDO PTHR24073
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1276
SonicParanoid 1 1.000 - - X452
TreeFam 1 0.960 - -
1211.850

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