DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ced-12 and AT3G60260

DIOPT Version :9

Sequence 1:NP_609548.1 Gene:Ced-12 / 34633 FlyBaseID:FBgn0032409 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_001078320.1 Gene:AT3G60260 / 825197 AraportID:AT3G60260 Length:266 Species:Arabidopsis thaliana


Alignment Length:232 Identity:51/232 - (21%)
Similarity:101/232 - (43%) Gaps:33/232 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 ALIGNGLG----------TEMTHQLYVLQTLTLGLLEKRMRMKMNAQDQDAHEKIKELRRIAFDD 325
            |.:|.||.          ...:..|...|...|..|:.|:.:..::......|.:|:|.::||. 
plant    37 AWLGRGLSCVCVQGRDGDPRPSFDLTPAQEECLQRLQSRIDVAYDSSIPQHQEALKDLWKLAFP- 100

  Fly   326 NTNALNQNDDHIRRGGGSGAGNVNFSQYYKKLGFKCDINPAQDFIETPPGILALDCMVYFARNYT 390
                  :.:.|         |.|  |..:|::|:: ..:|:.||  ...|.::|:.::||||.:.
plant   101 ------EEELH---------GIV--SDQWKEMGWQ-GKDPSTDF--RGGGFISLENLLYFARKFP 145

  Fly   391 QQYAKIVRENSCRADEHECPFGRTSIELVKVLCDILRIG--EPPAEQSGDFQPMFFTHDSPFEEF 453
            :.:..::|:........|.||....|.:..:|..:|.:.  :|.:.....|......::|.|:..
plant   146 KSFHGLLRKQVGDRSVWEYPFAVAGINITFMLIQMLDLEAVKPRSIVGETFLRFLSVNESAFDLL 210

  Fly   454 FCICVITLNRTWKDMRATAEDFSTTFSVVREQIQRTL 490
            :||....:::.|..|||:..:|:|.....|.|::|.:
plant   211 YCIAFKLMDQQWLSMRASYMEFNTVMKSTRRQLEREI 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ced-12NP_609548.1 DUF3361 122..275 CDD:288674 1/3 (33%)
ELMO_CED12 296..474 CDD:282570 39/179 (22%)
PH_ELMO1_CED-12 546..673 CDD:270166
AT3G60260NP_001078320.1 ELMO_CED12 70..236 CDD:398415 41/186 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12771
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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