DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ced-12 and Elmo3

DIOPT Version :9

Sequence 1:NP_609548.1 Gene:Ced-12 / 34633 FlyBaseID:FBgn0032409 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_038953533.1 Gene:Elmo3 / 291962 RGDID:1304734 Length:725 Species:Rattus norvegicus


Alignment Length:731 Identity:309/731 - (42%)
Similarity:443/731 - (60%) Gaps:36/731 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 HIVKIAVEREDHIAQLINLDQRHPLASKIQEICN-----GWSISDHQNYALQFYEPTNRKYVTEK 71
            ::|||||:..|.|.|||.|||..|||:.::|:|:     .||::..::|||||.: .:|||:||.
  Rat     6 NVVKIAVQMSDAIPQLIQLDQAKPLATVLKEVCDTFLLYRWSLTHPEHYALQFAD-GHRKYITEN 69

  Fly    72 NRNEIKNGSVLQLQYSPSKTACDAMEVLLNGSPQEKALRLKELTSLSTDHTFALEFIKEKGLDTL 136
            ||:||||||:|.|..:|...|...:..|.|.|.:.....|:.|..|::|.|||.|.|...||..|
  Rat    70 NRSEIKNGSILCLSTAPDLKAQQLLSRLQNASREGCCEVLRNLVPLASDMTFAQEVISRDGLQKL 134

  Fly   137 IKMIEDGGQTNEDILKYSLASFVELMEHGTVSWEVPENSFVARNIEIVRNFQKYPTNCGESALSN 201
            ..:||:|....| :|...|.:|:||||||.||||....|||.:.:..| |......:....||..
  Rat   135 STIIENGDDLGE-MLALGLRAFLELMEHGVVSWETLSISFVRKVVSYV-NMNLMDASVQPLALRL 197

  Fly   202 LENIVMCS-NKHVLVAEDIKLQDILRLLQDVNSPVMRQNAIALLNALFVKADEGRRRTIAQTISA 265
            ||::.:.| ....||..::.|..:|..||.:|.. ::..|:|||.||...|....|:.:...:..
  Rat   198 LESVTLSSPTLGQLVKSEVPLDRLLVHLQVMNQQ-LQTKAMALLTALLQGASPAERKDMLDCLWK 261

  Fly   266 KQFRLALIGN------GLGTEMTHQLYVLQTLTLGLLEKRMRMKMNAQDQDAHEKIKELRRIAFD 324
            |..|..:..|      .:|.||.|.|||||.|||||||.|||..::...|:..|:::.||:.||:
  Rat   262 KNLRQFIYKNIIHSAAPMGDEMAHHLYVLQALTLGLLEPRMRTPLDPYSQEQREQLQALRQAAFE 326

  Fly   325 DNTNALNQNDDHIRRGGGSGAGNVN--FSQYYKKLGFKCDINPAQDFIETPPGILALDCMVYFAR 387
            .:..:|         |.|..|....  ..:.::||||. :.:||||....|||:||||.|:||:|
  Rat   327 PDGESL---------GTGLSADRRRSLCVREFRKLGFS-NSSPAQDLERVPPGLLALDNMLYFSR 381

  Fly   388 NYTQQYAKIVRENSCRADEHECPFGRTSIELVKVLCDILRIGEPPAEQSGDFQPMFFTHDSPFEE 452
            :....|::.|.|||.|.|:|||||.|:||:|..:||::|.:|||.:|.:.||.||||:.|..|.|
  Rat   382 HAPSAYSRFVLENSSREDKHECPFARSSIQLTVLLCELLHVGEPCSETAQDFSPMFFSQDHSFHE 446

  Fly   453 FFCICVITLNRTWKDMRATAEDFSTTFSVVREQIQRTLKGRPENLDDFRNKIALLTYQQITTLRQ 517
            .||:.:..||:|||:||||.|||.....|||||:.|||..:|.:|:.||.|:..|||.::..|||
  Rat   447 LFCVAIQLLNKTWKEMRATQEDFDKVMQVVREQLARTLALKPTSLELFRTKVNALTYGEVLRLRQ 511

  Fly   518 QERTSKEECDSTASAIVKLKEKISPQILELIKQQRLSFLVEGTHFAKYLRGTRTKDKFWYARLSP 582
            .||..:|  .:.|..|::|:||:.|:::.||:||||..|.||..|.| :...|.:||.|:..|||
  Rat   512 TERLHQE--GTLAPPILELREKLKPELMGLIRQQRLLRLCEGMLFRK-ISSRRRQDKLWFCCLSP 573

  Fly   583 NHKVIHYGDCDE-KTIPTMEELPKKLPISEIKQLLEGKECPHMKET---RIRKSAVNLAFSITFE 643
            ||||:.|||.:| ...||:|.|.::||:::|:.||.||:|||::|.   :..|....|||||:::
  Rat   574 NHKVLQYGDVEEGANPPTLESLTEQLPVADIRALLMGKDCPHVREKGSGKQNKDLYELAFSISYD 638

  Fly   644 N-MEHSTLDFVAPDESIFNYWTDGINALLGQPMVSKQKNEDFDTLLSMEIKLRLLDTEGVDISKD 707
            : .|.:.|:|:||.:..|..||||::||||..|.|:|...|.:.||:||.|||||:.|.|.|.:.
  Rat   639 HGEEEAYLNFIAPSKRDFYLWTDGLSALLGSTMGSEQTRLDLEQLLTMETKLRLLELENVPIPEH 703

  Fly   708 PPPIPEDPENYDFCFE 723
            |||:|..|.|::||::
  Rat   704 PPPVPPPPTNFNFCYD 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ced-12NP_609548.1 DUF3361 122..275 CDD:288674 52/153 (34%)
ELMO_CED12 296..474 CDD:282570 77/179 (43%)
PH_ELMO1_CED-12 546..673 CDD:270166 60/131 (46%)
Elmo3XP_038953533.1 DUF3361 121..272 CDD:403139 51/153 (33%)
ELMO_CED12 297..473 CDD:398415 81/185 (44%)
PH-like 539..668 CDD:418428 59/129 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 206 1.000 Domainoid score I2804
eggNOG 1 0.900 - - E1_KOG2999
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 615 1.000 Inparanoid score I864
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D177102at33208
OrthoFinder 1 1.000 - - FOG0001427
OrthoInspector 1 1.000 - - otm45630
orthoMCL 1 0.900 - - OOG6_102058
Panther 1 1.100 - - O PTHR12771
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1314
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.830

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