DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ced-12 and elmo2

DIOPT Version :9

Sequence 1:NP_609548.1 Gene:Ced-12 / 34633 FlyBaseID:FBgn0032409 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_001186987.1 Gene:elmo2 / 100006857 ZFINID:ZDB-GENE-140106-84 Length:711 Species:Danio rerio


Alignment Length:727 Identity:325/727 - (44%)
Similarity:465/727 - (63%) Gaps:38/727 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SHIVKIAVEREDHIAQLINLDQRHPLASKIQEICNGWSISDHQNYALQFYEPTNRKYVTEKNRNE 75
            |.|||:|:|.....||||.:||:.||||.|:|:|.|||:|..:.:||: |....:.|:||:.|.|
Zfish     5 SDIVKVAIEWPGANAQLIEIDQKKPLASIIREVCEGWSLSGSEQFALR-YADGPQLYITEQTRGE 68

  Fly    76 IKNGSVLQLQYSPSKTACDAMEVLLNGSPQEKALRLKELTSLSTDHTFALEFIKEKGLDTLIKMI 140
            ||||::|:|..||.:.|...:|.:.:.|...:...||||..||.|..||.|||...||.||.:::
Zfish    69 IKNGTILRLAISPMRAARQLLERIQSHSIDARLEALKELAKLSADAAFASEFINIDGLVTLARLV 133

  Fly   141 EDGGQTNEDILKYSLASFVELMEHGTVSWEVPENSFVARNIEIVRNFQKYP---TNCGESALSNL 202
            |.|....| :|.::|.:|:|||:||.||||:...||:.:    :..:...|   .:..:.:|:.|
Zfish   134 ESGTHFGE-MLAFTLTAFLELMDHGIVSWELLSLSFIKQ----IAGYVNQPMVDVSILQRSLAIL 193

  Fly   203 ENIVMCSNKHVLVAEDIKLQDILRLLQDVNSPVMRQNAIALLNALFVKADEGRRRTIAQTISAKQ 267
            |::|:  |.|.|.....:...:.:|:..:::..::..||||:||||:|..|.||:.:|.|::.:.
Zfish   194 ESMVL--NSHSLYQRVAQETTVAQLITHLSNQEIQTYAIALINALFLKTPEDRRQEMAATLAQRH 256

  Fly   268 FRLALI-----GN-GLGTEMTHQLYVLQTLTLGLLEKRMRMKMNAQDQDAHEKIKELRRIAFDDN 326
            .|..::     || .:..||.|||||||.||..|||:||..||:..||...:.|.||||||||. 
Zfish   257 LRAIILNHIIRGNRPVKAEMAHQLYVLQVLTFNLLEERMMTKMDPNDQTQRDVIFELRRIAFDG- 320

  Fly   327 TNALNQNDDHIRRGGGSGAGNVNFSQYYKKLGFKCDINPAQDFIETPPGILALDCMVYFARNYTQ 391
             :|...:....|:...       .::.|:.|||...:|||.||.:||||:||||.|:|.|:.:..
Zfish   321 -DAAEPSGTEKRKAAA-------HTKDYRMLGFSNAVNPALDFTQTPPGMLALDNMLYLAKLHQD 377

  Fly   392 QYAKIVRENSCRADEHECPFGRTSIELVKVLCDILRIGEPPAEQSGDFQPMFFTHDSPFEEFFCI 456
            .|.:||.|||.|.|:|||||.|.:|||.:||||||::||.|.|...||.||||||:..:|||||:
Zfish   378 TYIRIVLENSSREDKHECPFARCAIELTRVLCDILQVGELPNEGCNDFHPMFFTHERAWEEFFCV 442

  Fly   457 CVITLNRTWKDMRATAEDFSTTFSVVREQIQRTLKGRPENLDDFRNKIALLTYQQITTLRQQERT 521
            |:..||:|||:||||||||:...:||||||.|.|..:|.:||..|.|:..|:|.:|..|||.||.
Zfish   443 CIQLLNKTWKEMRATAEDFNKVMTVVREQITRALALKPASLDQLRLKLRSLSYSEILRLRQSERM 507

  Fly   522 SKEECDSTASAIVKLKEKISPQILELIKQQRLSFLVEGTHFAKYLRGTRTKDKFWYARLSPNHKV 586
            |::  |..:..|::|:|:|.|:|||||||||||.|.||:.|.| |...|.::|||:.|||.|||:
Zfish   508 SQD--DFQSPPIIELRERIQPEILELIKQQRLSRLCEGSCFRK-LGNRRRQEKFWFCRLSLNHKL 569

  Fly   587 IHYGDCDEK---TIPTMEELPKKLPISEIKQLLEGKECPHMKE---TRIRKSAVNLAFSITFENM 645
            :||||.:|.   .:| :|.|..|:.:|:||.:|.||:||||||   .:..|..:.|||||.::..
Zfish   570 LHYGDLEESPQGEVP-LELLTDKIAVSDIKAVLTGKDCPHMKEKSALKQNKEVLELAFSILYDPD 633

  Fly   646 EHSTLDFVAPDESIFNYWTDGINALLGQPMVSKQKNEDFDTLLSMEIKLRLLDTEGVDISKDPPP 710
            |  :|:||||::..:..||||::||||:.:.|.....|.|||:|||:||||||.|.:.|.:.|||
Zfish   634 E--SLNFVAPNKYEYCIWTDGLSALLGKDLSSDLTRSDLDTLMSMEMKLRLLDLENITIPEAPPP 696

  Fly   711 IPEDPENYDFCF 722
            :|::|.:|:|.:
Zfish   697 VPKEPSSYNFSY 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ced-12NP_609548.1 DUF3361 122..275 CDD:288674 50/160 (31%)
ELMO_CED12 296..474 CDD:282570 90/177 (51%)
PH_ELMO1_CED-12 546..673 CDD:270166 65/132 (49%)
elmo2NP_001186987.1 DUF3361 116..265 CDD:288674 50/155 (32%)
ELMO_CED12 291..460 CDD:282570 90/177 (51%)
PH_ELMO1_CED-12 530..659 CDD:270166 65/132 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 127 1.000 Domainoid score I5308
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 592 1.000 Inparanoid score I940
OMA 1 1.010 - - QHG52862
OrthoDB 1 1.010 - - D177102at33208
OrthoFinder 1 1.000 - - FOG0001427
OrthoInspector 1 1.000 - - otm24671
orthoMCL 1 0.900 - - OOG6_102058
Panther 1 1.100 - - LDO PTHR12771
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1314
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.980

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