DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6712 and RPF1

DIOPT Version :9

Sequence 1:NP_477479.1 Gene:CG6712 / 34631 FlyBaseID:FBgn0032408 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_079341.2 Gene:RPF1 / 80135 HGNCID:30350 Length:349 Species:Homo sapiens


Alignment Length:359 Identity:156/359 - (43%)
Similarity:230/359 - (64%) Gaps:23/359 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 EEAASSSKKTAKQGEASEDLKEEDDDDDEEENDDDDEEEDDDDDDDKKTRIPVLNPLSWMRNKEQ 108
            ::::||.||:.|:..|:|:|        :|.....|...::.....|....|....:|.::||::
Human     6 DKSSSSGKKSLKRKAAAEEL--------QEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNKQR 62

  Fly   109 RLALYKKMKKEKHKKKM-------QERRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEEL 166
            |..::.:.|:::.|:|:       :||.|......|.....||::.|..|:|.|    |.::||:
Human    63 RHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTV----DPNDEEV 123

  Fly   167 QKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAE 231
            ..:...|:|:|||.:...||:|||.:|.|..:|.:...:||.:.||:.|..|...::|||.....
Human   124 AYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCI 188

  Fly   232 REEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTT 296
            ..:|||::::||||:.||||::.|||||||||||:|:|:|..:|||..|:.|:|.||:|||||||
Human   189 ARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTT 253

  Fly   297 RLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTLKLR 361
            |||.::|||..:||.|:|:|.||:..||||||||||||.|||.|..| |:|.::|||||||||||
Human   254 RLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSE-KKVGIQELGPRFTLKLR 317

  Fly   362 SLQEGTFDSKTGDYAWIISNKRHAME-SRRRFFL 394
            |||:||||||.|:|.|:  :|...|: |||:|.|
Human   318 SLQKGTFDSKYGEYEWV--HKPREMDTSRRKFHL 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6712NP_477479.1 Brix 188..358 CDD:214879 93/169 (55%)
RPF1NP_079341.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..105 23/106 (22%)
Brix 145..314 CDD:214879 93/169 (55%)
RNA-binding. /evidence=ECO:0000250 303..320 13/16 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165147833
Domainoid 1 1.000 196 1.000 Domainoid score I3139
eggNOG 1 0.900 - - E1_COG2136
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68728
Inparanoid 1 1.050 285 1.000 Inparanoid score I2865
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53520
OrthoDB 1 1.010 - - D768872at2759
OrthoFinder 1 1.000 - - FOG0004778
OrthoInspector 1 1.000 - - oto89072
orthoMCL 1 0.900 - - OOG6_102467
Panther 1 1.100 - - LDO PTHR22734
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1780
SonicParanoid 1 1.000 - - X3362
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.800

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