DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6712 and Rpf1

DIOPT Version :10

Sequence 1:NP_477479.1 Gene:CG6712 / 34631 FlyBaseID:FBgn0032408 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_001094264.1 Gene:Rpf1 / 499725 RGDID:1559755 Length:349 Species:Rattus norvegicus


Alignment Length:355 Identity:155/355 - (43%)
Similarity:223/355 - (62%) Gaps:21/355 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 AKQGEAS-----EDLKEEDDDDDEEEND-DDDEEEDDDDDDDKKTRIPVLNPLSWMRNKEQRLAL 112
            ||.||.|     ..||.:...::.:|.. ..|...:......|....|....:|.::||::|..:
  Rat     2 AKAGEKSGGGGKRGLKRKAPAEEPQETAVASDGTAESGVQSAKAAAFPPGFSISEIKNKQRRHLM 66

  Fly   113 YKKMKKEKHKKKM-------QERRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEELQKEL 170
            :.:.|:::.|:|:       :||.|......|.....||::.|..|:|.|    |.::||:..:.
  Rat    67 FTRWKQQQRKEKLAAKKKLKREREALGDKAPPKPVPKTIDNQRVYDETTV----DPNDEEVAYDE 127

  Fly   171 QLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEF 235
            ..|:|:|||.|...||:|||.:|.|..:|.:...:||.:.|::.|..|...::|||.......:|
  Rat   128 ATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDF 192

  Fly   236 TDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGL 300
            ||::::||||:.||||::.|||||||||||:|:|:|..:|||..|:.|:|.||:||||||||||.
  Rat   193 TDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGH 257

  Fly   301 TVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTLKLRSLQE 365
            ::|||..:||.|:|:|.||:..||||||||||||.|||.|..| |:|.::||||||||||||||:
  Rat   258 SIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSE-KKVGIQELGPRFTLKLRSLQK 321

  Fly   366 GTFDSKTGDYAWIISNKRHAME-SRRRFFL 394
            ||||||.|:|.|:  :|...|: |||:|.|
  Rat   322 GTFDSKYGEYEWV--HKPREMDTSRRKFHL 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6712NP_477479.1 Brix 188..358 CDD:214879 92/169 (54%)
Rpf1NP_001094264.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..57 12/54 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 70..105 7/34 (21%)
Brix 145..314 CDD:214879 92/169 (54%)
RNA-binding. /evidence=ECO:0000250 303..320 13/16 (81%)

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