DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6712 and rpf1

DIOPT Version :9

Sequence 1:NP_477479.1 Gene:CG6712 / 34631 FlyBaseID:FBgn0032408 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_001165011.1 Gene:rpf1 / 100328984 XenbaseID:XB-GENE-5777492 Length:342 Species:Xenopus tropicalis


Alignment Length:349 Identity:159/349 - (45%)
Similarity:230/349 - (65%) Gaps:16/349 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 AKQGEASEDLKEEDDDDDEEENDDDDEEEDDDDDDDKKTRIPVLNPLSWMRNKEQRLALYKKMKK 118
            |:.|..::..|:..:..:.||. |..|......:..:..:.|....||.::||::|..::.::|:
 Frog     2 AENGPQAKKQKKMKNKPEVEET-DVAEAAGPSAEQPQAAQFPPTFSLSEIKNKQRRQFMFMRLKQ 65

  Fly   119 EKHKKKMQERRARRKA------GVPANP-GHTIESLREKDQTEVANLNDSDNEELQKELQLDDFS 176
            ||.|:|:..|:.|:|.      ..|..| ..|||:.|..|:|.|    |..:||:..:..:|:|:
 Frog    66 EKRKEKLALRKKRKKERAALGDKAPPKPVPKTIENQRVYDETTV----DPADEEVALDEAIDEFA 126

  Fly   177 SYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIV 241
            .||.:...||:|||.:|.|..:|.:|..:||.:.||:.|..|...::||:.......::||::|:
 Frog   127 PYFNKQTTPKILITTSDRPRGRTVRFTEQLSSVIPNSDVYYRRGLALKKVIPQCISRDYTDLIII 191

  Fly   242 NEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRML 306
            ||||:.||||:..|||:|||||||:|||:|..::||..||.|:|:|||||||||||||.::|||.
 Frog   192 NEDRKVPNGLVFCHLPDGPTAHFKMSNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMF 256

  Fly   307 GALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTLKLRSLQEGTFDSK 371
            .:|:.|||:|.||:..||||||||||||:|||.|..| |:|.::||||||||||||||:||||||
 Frog   257 ASLYPHDPQFTGRQVATFHNQRDYIFFRYHRYIFKSE-KKVGIQELGPRFTLKLRSLQKGTFDSK 320

  Fly   372 TGDYAWIISNKRHAME-SRRRFFL 394
            .|:|.|:  :|||.|: |||:|.|
 Frog   321 YGEYEWV--HKRHEMDTSRRKFHL 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6712NP_477479.1 Brix 188..358 CDD:214879 94/169 (56%)
rpf1NP_001165011.1 Brix 138..307 CDD:214879 94/169 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 162 1.000 Domainoid score I3961
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68728
Inparanoid 1 1.050 272 1.000 Inparanoid score I2926
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D768872at2759
OrthoFinder 1 1.000 - - FOG0004778
OrthoInspector 1 1.000 - - oto102934
Panther 1 1.100 - - LDO PTHR22734
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1780
SonicParanoid 1 1.000 - - X3362
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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