DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Sdcbp

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_114192.1 Gene:Sdcbp / 83841 RGDID:621497 Length:300 Species:Rattus norvegicus


Alignment Length:164 Identity:43/164 - (26%)
Similarity:66/164 - (40%) Gaps:42/164 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 SANTAS---YIMPGENGNTTPTGNIIVSSYETQLGSVYG---TETETHQTMPRNESPNESVSSA- 423
            |||.||   ::...::....|.||:....| .:|....|   :|.|..:.||       .||.| 
  Rat    23 SANPASQAFFLNVVDSAAFPPGGNLYPKLY-PELSQYMGLSLSEAEICENMP-------VVSGAP 79

  Fly   424 -FGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANA-SAGSEELSAALKVESVD------L 480
             .|||...|:|::.:|  |.||.:......|:..|.:... ....::....|:::|||      |
  Rat    80 TQGQLVARPSSVNYMV--APVTGNDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQL 142

  Fly   481 IAA-SQSQLYG----------------GWSSMQA 497
            :.| |.:.|.|                ||||.:|
  Rat   143 VQANSPASLVGLRFGDQVLQINGENCAGWSSDKA 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeobox 217..269 CDD:278475
SdcbpNP_114192.1 Interaction with PDCD6IP. /evidence=ECO:0000250|UniProtKB:O08992 2..104 27/90 (30%)
LYPX(n)L motif 1. /evidence=ECO:0000250|UniProtKB:O08992 3..7
LYPX(n)L motif 2. /evidence=ECO:0000250|UniProtKB:O08992 47..51 0/3 (0%)
LYPX(n)L motif 3. /evidence=ECO:0000250|UniProtKB:O08992 51..55 1/4 (25%)
PDZ_signaling 114..193 CDD:238492 14/63 (22%)
PDZ_signaling 198..271 CDD:238492
phosphatidylinositol-4, 5-bisphosphate-binding. /evidence=ECO:0000250|UniProtKB:O00560 252..253
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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