DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and RLT2

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_199231.1 Gene:RLT2 / 834441 AraportID:AT5G44180 Length:1694 Species:Arabidopsis thaliana


Alignment Length:425 Identity:82/425 - (19%)
Similarity:126/425 - (29%) Gaps:159/425 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 KRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTS 274
            |||.:      :|:||:.||..:....||....|.:|:.:.||::.::|:||.:||.:.||    
plant    20 KRKMK------TAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKERK---- 74

  Fly   275 VSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVSA 339
                               |:.||.......:.|.||  .|.:|                 .|:|
plant    75 -------------------STTPSKRQRKELVTPTAM--ESWEP-----------------PVNA 101

  Fly   340 AAPMASSNL----------SPGITTTPPHHHQFYNPSA---NTASYIMPGENGNTTPTGNIIVSS 391
            ...:|.:.|          ..|:|..    .:|..||:   ....|:                  
plant   102 GDLVAGNELDSRRAARGSGGSGVTVV----RRFNEPSSAEVRAIGYV------------------ 144

  Fly   392 YETQLGSVYGTETETHQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSGA-GVTSSSGANSGADP 455
             |.|||.           ..|:..|  .:...|..|||          || |:....       |
plant   145 -EAQLGE-----------RLRDNGP--VLGMEFDPLPP----------GAFGMPIEM-------P 178

  Fly   456 SQSLANASAGSEELSAALKVESVDLIAASQSQLYGGWSSMQALR-----PNAPLSPEDSLNSTSS 515
            |...|...|....:.....|:.:.             ..::.:|     |..|.|..|.....| 
plant   179 SHRKATRQAFETNIYVRSDVKPIK-------------DHVRPIREYQFIPELPSSRTDHSERVS- 229

  Fly   516 TSQALDVTAHQMFHPYQHTPQYASYPAPGHAHSHHGHPHAPHPHAHPHPQYAGAHPHYPPPSSSA 580
                   .:|....|...:....|..:.||...:...|..|:.:...|....| |.:.|      
plant   230 -------PSHHFGVPLDGSVMRVSAVSAGHRDDYKISPQIPNLNLATHQGKPG-HVYSP------ 280

  Fly   581 HFMPQNFNAAAFPSPSKVNYTTMPPQ----PFYPS 611
                   |...:.||.:.:|.....|    ||..|
plant   281 -------NLVEYDSPYQKSYMDTAAQVHDDPFVKS 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 16/55 (29%)
RLT2NP_199231.1 Homeodomain 18..74 CDD:459649 19/59 (32%)
DUF5401 <322..>457 CDD:375164
DDT 515..570 CDD:460696
HARE-HTH 696..765 CDD:461541
WHIM1 899..941 CDD:464774
WSD 1071..1145 CDD:464775
Blue background indicates that the domain is not in the aligned region.

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