DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and phox2ba

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001139175.1 Gene:phox2ba / 795258 ZFINID:ZDB-GENE-090313-51 Length:155 Species:Danio rerio


Alignment Length:110 Identity:58/110 - (52%)
Similarity:71/110 - (64%) Gaps:7/110 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 EPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARL 268
            |.|:..:|||||.||.|:::||..|||||..||||||||||||.|...|||||:||||.||||:.
Zfish     4 ERGVQERRKQRRVRTIFTSAQLKALERAFAHTQYPDIYTREELVQEIQLTEARVQVWFQNRRAKF 68

  Fly   269 RKQHTSVSGGAPGGAA-ASVSH---VAASSSLPSVVSSVPSMAPL 309
            |||..:.|........ :|.||   ..||::.|.  |:.||: ||
Zfish    69 RKQERAASWNESSSKTHSSPSHDSSETASATDPD--STQPSL-PL 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 38/55 (69%)
phox2baNP_001139175.1 Homeodomain 14..70 CDD:459649 38/55 (69%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.