DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Duxf3

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_030101272.1 Gene:Duxf3 / 74399 MGIID:1921649 Length:674 Species:Mus musculus


Alignment Length:439 Identity:105/439 - (23%)
Similarity:138/439 - (31%) Gaps:152/439 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 SEP-GIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRA 266
            |.| |..|:...||.||..::.|...|.:||||...|...||||||:.|.|.|..|.:||.||||
Mouse   101 SRPQGRGLRSSGRRPRTRLTSLQRRILGQAFERNPRPGFATREELARDTGLPEDTIHIWFQNRRA 165

  Fly   267 RLRKQH------------TSVSGGAPGGAAASVSHVAASSSLP-----------SVVSSVPSM-- 306
            |.|.:.            :..|.|||.|........|..|.||           |..|.:||.  
Mouse   166 RRRHRRGRPTAQDQDLLASQGSDGAPTGPEGREREGAQESLLPQEEAGSTGMDTSSPSDLPSFCR 230

  Fly   307 -----------------APL-AMMPGSLDPATVYQQQYDFYGSHANISVSAAAPMASSNL----- 348
                             ||. |...|||:|  :..|..|      .:.|...|| |..||     
Mouse   231 ESQPFQVAQPRGAGQQEAPTQAGNAGSLEP--LLDQLLD------EVQVEEPAP-APLNLDGDPG 286

  Fly   349 ------------------SPGITTTPPHHHQFYNPSANTASYIMPGENG------NTTPTGNIIV 389
                              |.|:.|:.|.....:...:..:....|..:|      ....||.:.:
Mouse   287 GRVHEGSQKSFWPQEEAGSTGMDTSSPSDSNSFCRESFPSQVAQPCGSGQEDARTQADSTGPLEL 351

  Fly   390 SSYETQLGSVYGTETETHQTMP----RNESPNESVSSAFGQLPPTPNSLSAVVSGAGVTSSSGAN 450
            ...:..|..|   :.|.|..:|    ||....|...|....||                ....||
Mouse   352 LLLDQLLDEV---QKEEHVPVPLDWGRNPGSREHEGSQDSLLP----------------LEEAAN 397

  Fly   451 SGAD------------------------PSQSLANASAGSEELSAALKVESVDLIAASQ------ 485
            ||.|                        |.|:.|....|:.:....|..:.:|.:...:      
Mouse   398 SGMDTSIPSIWPTFCRESQPPQVAQPSGPGQAQAPTQGGNTDPLELLLYQLLDEVQVEEHAPAPL 462

  Fly   486 -------SQLY-GGWSSMQALRPNAPL-----SPEDSLNS---TSSTSQ 518
                   .::: |.|.|....|.....     ||.|| ||   .|.|||
Mouse   463 NWDVDPGGRVHEGSWESFWPQREAGSTGLDTSSPSDS-NSFCRESQTSQ 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 28/55 (51%)
Duxf3XP_030101272.1 homeodomain 19..73 CDD:238039
HOX 112..162 CDD:197696 23/49 (47%)
Blue background indicates that the domain is not in the aligned region.

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