DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and shox

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_005167911.1 Gene:shox / 664748 ZFINID:ZDB-GENE-051030-21 Length:304 Species:Danio rerio


Alignment Length:262 Identity:83/262 - (31%)
Similarity:109/262 - (41%) Gaps:53/262 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 AGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDELERAFE 233
            |.||.........||        |..|||...         |.||||.||.|:..||:||||.|:
Zfish    82 ASDGIYDCKDKKEDV--------KSEDEDAQS---------KLKQRRSRTNFTLEQLNELERLFD 129

  Fly   234 RTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPS 298
            .|.|||.:.||||:||..|:|||:||||.||||:.|||...:..|...|.|   ||:.|....|.
Zfish   130 ETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTA---SHLDACRVAPY 191

  Fly   299 VVSSVPSMAPLAMMPGSLDPATVYQQQYDFYG----SHANISVSAAAPMASSNLSPGITTTPPHH 359
            |     :|..|.|      |....|.|....|    ||.::....||.      :|.:...||  
Zfish   192 V-----NMGALRM------PFQQVQAQLQLEGVGTHSHPHLHPHLAAH------APYLMFPPP-- 237

  Fly   360 HQFYNP------SANTASYIMPGENGNTTPTGNIIVSSYETQLGSVYGTETETHQTMPRNESPNE 418
             .|..|      ||:.|:.::.....|:.   |..::....:.|.:.|......|.......|.:
Zfish   238 -PFGLPIASLADSASAAAAVVAAAKSNSK---NSSIADLRLKAGLLGGHWLSPFQAQITAPGPYK 298

  Fly   419 SV 420
            :|
Zfish   299 NV 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 34/55 (62%)
shoxXP_005167911.1 SCP-1 <1..>145 CDD:114219 32/79 (41%)
Homeodomain 110..166 CDD:459649 34/55 (62%)
Blue background indicates that the domain is not in the aligned region.

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