DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and pax1a

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_068070533.1 Gene:pax1a / 564359 ZFINID:ZDB-GENE-070112-182 Length:359 Species:Danio rerio


Alignment Length:455 Identity:153/455 - (33%)
Similarity:199/455 - (43%) Gaps:143/455 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 93
            |.||||||||:|||||||.|||:|||:|..|||||.||||||||||||||||.||.|||||.||.
Zfish    11 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGA 75

  Fly    94 IGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR------- 151
            |||||||:.||.:...|.:||:|.||:|:||||::|:.:||||:...||||:|||::|       
Zfish    76 IGGSKPRVTTPNVVKNIRDYKQSDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLS 140

  Fly   152 -------GRDAPLDNDMS-------SASGSPAGDGTKASSSCGSDVSGGH--HNNGKPSDEDISD 200
                   |:.||..:.:|       |...:.:..|||.||..|..|:|||  .:.|.||...:|:
Zfish   141 QPNPYENGKQAPPQSSLSYNHIYPYSYPNAMSPSGTKMSSPPGVPVTGGHVSISRGWPSAHTVSN 205

  Fly   201 CESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEA-----RIQVW 260
            .   .||                      |||              ...|.:..|     :::.|
Zfish   206 I---LGI----------------------RAF--------------MDPTAIASAEGYAPKMEDW 231

  Fly   261 FSNRRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVY--Q 323
            ..||..   .|...|:|.......|.:.:...||:|.|.|                 ||..|  .
Zfish   232 GVNRAT---FQSHGVNGIDKSSIDADIKYPQPSSTLSSYV-----------------PACAYSPS 276

  Fly   324 QQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNII 388
            .||..|...|...||                 |.||.|     |...|...||            
Zfish   277 NQYGVYSGPAGGYVS-----------------PGHHWQ-----AQGTSLTHPG------------ 307

  Fly   389 VSSYETQLGSVYGTETETHQTMPRNESPNESVSSAFGQLPPTP------NSLSAVVSGAGVTSSS 447
                    |.|....::.|.:|....:..:.     .:.||:|      .:||. :.|..:::||
Zfish   308 --------GGVAMHPSDIHSSMAFKHAVRDG-----DRKPPSPLSKQQHEALSG-IHGLSLSTSS 358

  Fly   448  447
            Zfish   359  358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 87/138 (63%)
Homeodomain 214..270 CDD:459649 8/60 (13%)
pax1aXP_068070533.1 PAX 9..136 CDD:238076 86/124 (69%)

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