DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and pax4

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001232009.2 Gene:pax4 / 561564 ZFINID:ZDB-GENE-041210-244 Length:360 Species:Danio rerio


Alignment Length:404 Identity:135/404 - (33%)
Similarity:196/404 - (48%) Gaps:72/404 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIR 90
            ||:|.||||||||:||||||...|..::|:|.:|:|||.|||.|:||:|||||||.|:|.||:|.
Zfish    14 SGEGSVNQLGGVFLNGRPLPVYKRRLMIELATEGMRPCEISRILKVSNGCVSKILGRFQRTGAIG 78

  Fly    91 PGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGRDA 155
            |..:|||:||:.|||:.:.|.::||.:|.:|:||||:||..|..|.....||||:|:|:::    
Zfish    79 PKAVGGSRPRLLTPEVISIIVQHKRQNPTLFAWEIRQKLATERACRGDQVPSVSSINRILK---- 139

  Fly   156 PLDNDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDI---SDCESEPGIALKRKQRRCR 217
                                  ....||...:.|......|.:   |..:.:....|:|...|.|
Zfish   140 ----------------------KIHQDVDIAYPNEKHYHTEHLNVQSHFQQQMNTNLRRTAHRSR 182

  Fly   218 TTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRK----QHTSVSGG 278
            |.|:|.|...||:.|....|||:.|||:||:.|||::..|:|||||||||:|:    :|......
Zfish   183 TAFTADQSGRLEKEFTCGLYPDLLTREKLAEETNLSQDTIKVWFSNRRARMRRERKFEHNDCGIA 247

  Fly   279 APG------GAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISV 337
            ..|      .|..|:|..|..|.........||..|||          ..:.:..|..:|.|.:.
Zfish   248 RRGFLGNCRNALISLSSTAGCSLDDYRAHHAPSAFPLA----------AQRDRNTFPLAHLNSNA 302

  Fly   338 SAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQLGSVYGT 402
                 ::|.:.....:..|..||                  ||......::..:.:.::....||
Zfish   303 -----LSSCSFDQTESLMPMCHH------------------GNEALAYRLVSPNIDERILLANGT 344

  Fly   403 ETETHQTMPRNESP 416
            :...|:|:....||
Zfish   345 QWMNHKTLTGQNSP 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 69/126 (55%)
Homeobox 217..269 CDD:278475 29/51 (57%)
pax4NP_001232009.2 PAX 15..139 CDD:128645 69/123 (56%)
HOX 180..228 CDD:197696 24/47 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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