DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Sdcbp

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001091697.1 Gene:Sdcbp / 53378 MGIID:1337026 Length:299 Species:Mus musculus


Alignment Length:161 Identity:41/161 - (25%)
Similarity:66/161 - (40%) Gaps:37/161 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 SANTAS--YIMPGENGNTTPTGNIIVSSYETQLGSVYG---TETETHQTMPRNESPNESVSSAFG 425
            |||.||  :::...:....|.||:....| .:|....|   .|.|..::||.     .|.:.|.|
Mouse    23 SANPASQAFVLVDASAALPPDGNLYPKLY-PELSQYMGLSLNEAEICESMPM-----VSGAPAQG 81

  Fly   426 QLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANA-SAGSEELSAALKVESVD------LIAA 483
            ||...|:|::.:|  |.||.:......|:..|.:... ....::....|:::|:|      |:.|
Mouse    82 QLVARPSSVNYMV--APVTGNDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQA 144

  Fly   484 -SQSQLYG----------------GWSSMQA 497
             |.:.|.|                ||||.:|
Mouse   145 NSPASLVGLRFGDQVLQINGENCAGWSSDKA 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeobox 217..269 CDD:278475
SdcbpNP_001091697.1 Interaction with PDCD6IP. /evidence=ECO:0000269|PubMed:22660413 2..103 26/87 (30%)
LYPX(n)L motif 1. /evidence=ECO:0000305|PubMed:22660413 3..7
LYPX(n)L motif 2. /evidence=ECO:0000305|PubMed:22660413 46..50 0/3 (0%)
LYPX(n)L motif 3. /evidence=ECO:0000305|PubMed:22660413 50..54 1/4 (25%)
PDZ_signaling 113..192 CDD:238492 13/63 (21%)
PDZ_signaling 197..270 CDD:238492
phosphatidylinositol-4, 5-bisphosphate-binding. /evidence=ECO:0000250|UniProtKB:O00560 251..252
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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