DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and PAX4

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001353039.1 Gene:PAX4 / 5078 HGNCID:8618 Length:351 Species:Homo sapiens


Alignment Length:440 Identity:143/440 - (32%)
Similarity:197/440 - (44%) Gaps:137/440 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 MHRPFFNGYSTMQDMNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHG 74
            ||:   :|.|:|          |||||:|:||||||.:.|.:||.:|..|:|||.|||.|:||:|
Human     1 MHQ---DGISSM----------NQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNG 52

  Fly    75 CVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRST 139
            ||||||.||..||.:.|..|||||||:|||.:..||.:.|...|.:|:|||:.:|..||:|.:..
Human    53 CVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDK 117

  Fly   140 APSVSAISRLVRG----RDAPLDNDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISD 200
            .||||:|:|::|.    :..|.....|.|..:||    ..:...||:...|.|            
Human   118 TPSVSSINRVLRALQEDQGLPCTRLRSPAVLAPA----VLTPHSGSETPRGTH------------ 166

  Fly   201 CESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRR 265
                ||..     .|.||.||.||.:.||:.|:|.||||...|.:||..|:|.|..::|||||||
Human   167 ----PGTG-----HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRR 222

  Fly   266 ARLRKQ-----HTSVSGGAPGGAAASVSHVAASSSLPSVVSS--VPSMAPLAMMPGSLDP--ATV 321
            |:.|:|     ...:.|.:.|   .:|..||     |.::|:  .|...|.|.:| :|:|  .:.
Human   223 AKWRRQEKLKWEMQLPGASQG---LTVPRVA-----PGIISAQQSPGSVPTAALP-ALEPLGPSC 278

  Fly   322 YQQQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGN 386
            ||..:            |.||...      ::.||                              
Human   279 YQLCW------------ATAPERC------LSDTP------------------------------ 295

  Fly   387 IIVSSYETQLGSVYGTETETHQTMPRNESPNESVSSAFGQLPPTPNSLSA 436
                                         |...:...:|.|||.||||.:
Human   296 -----------------------------PKACLKPCWGHLPPQPNSLDS 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 67/130 (52%)
Homeobox 217..269 CDD:278475 28/51 (55%)
PAX4NP_001353039.1 PAX 5..129 CDD:128645 69/133 (52%)
Homeobox 174..226 CDD:306543 28/51 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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