DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and PAX3

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_852124.1 Gene:PAX3 / 5077 HGNCID:8617 Length:505 Species:Homo sapiens


Alignment Length:500 Identity:224/500 - (44%)
Similarity:278/500 - (55%) Gaps:76/500 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRP 91
            ||||||||||||||||||||:||.||||||..||||||||||||||||||||||.||||||||||
Human    34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRP 98

  Fly    92 GVIGGSKPR-IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR---- 151
            |.||||||: :.||::|.:||||||.:|||||||||:||:::.||||:|.||||:|||::|    
Human    99 GAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFG 163

  Fly   152 -GRDAPLDNDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRR 215
             |.:...|.:...|..|.    .||..|....:|   .....|..::.||.:|||.:.|||||||
Human   164 KGEEEEADLERKEAEESE----KKAKHSIDGILS---ERASAPQSDEGSDIDSEPDLPLKRKQRR 221

  Fly   216 CRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQ--------- 271
            .||||:|.||:|||||||||.|||||||||||||..|||||:||||||||||.|||         
Human   222 SRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAF 286

  Fly   272 HTSVSGGAPGGAAASVSHVAAS------SSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYG 330
            :..:.||.|..|..::.....|      :|:|..||. ||..  ...|..|.|:||:|       
Human   287 NHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSD-PSST--VHRPQPLPPSTVHQ------- 341

  Fly   331 SHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQ 395
                 |...:.|.:||     ....|...|.|   |:.|.|::.|  :|.:.|....|.:....|
Human   342 -----STIPSNPDSSS-----AYCLPSTRHGF---SSYTDSFVPP--SGPSNPMNPTIGNGLSPQ 391

  Fly   396 LGSVYGTETETHQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLA 460
               |.|..| .|..:|.....:.::|...|.|.||            .|.|:..:...|..:||.
Human   392 ---VMGLLT-NHGGVPHQPQTDYALSPLTGGLEPT------------TTVSASCSQRLDHMKSLD 440

  Fly   461 NASAGSEELSAALKVE--SVDLIAASQSQLYG--GWSSMQALRPN 501
            :...............  |:|.:...|   ||  |.|:...|:|:
Human   441 SLPTSQSYCPPTYSTTGYSMDPVTGYQ---YGQYGQSAFHYLKPD 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 101/132 (77%)
Homeobox 217..269 CDD:278475 44/51 (86%)
PAX3NP_852124.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 99/124 (80%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 50/55 (91%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 31/47 (66%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 25/69 (36%)
Homeobox 222..276 CDD:395001 44/53 (83%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 14/56 (25%)
Pax7 347..391 CDD:403540 13/53 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 209 1.000 Domainoid score I2843
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 331 1.000 Inparanoid score I2443
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm8597
orthoMCL 1 0.900 - - OOG6_105365
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1211.830

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