DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and Pax7

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_006239325.1 Gene:Pax7 / 500574 RGDID:1564360 Length:505 Species:Rattus norvegicus


Alignment Length:552 Identity:227/552 - (41%)
Similarity:284/552 - (51%) Gaps:146/552 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRP 91
            ||||||||||||||||||||:||.||||||..||||||||||||||||||||||.||||||||||
  Rat    34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRP 98

  Fly    92 GVIGGSKPR-IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPS--VSAISRLVRGR 153
            |.||||||| :|||::|.:||||||.:|||||||||::|:::|.|||||.||  ||:|||::|.:
  Rat    99 GAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIK 163

  Fly   154 DAPLDNDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRT 218
            ....::|.........|: .||..|    :.|...:.|...||. ||.||||.:.|||||||.||
  Rat   164 FGKKEDDEEGDKKEEDGE-KKAKHS----IDGILGDKGNRLDEG-SDVESEPDLPLKRKQRRSRT 222

  Fly   219 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAPGGA 283
            ||:|.||:|||:|||||.||||||||||||||.|||||:||||||||||.|||            
  Rat   223 TFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQ------------ 275

  Fly   284 AASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVSAAAPMASSNL 348
             |..:.:||.:.|               :||...|.                             
  Rat   276 -AGANQLAAFNHL---------------LPGGFPPT----------------------------- 295

  Fly   349 SPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQLGSVYGTETETHQTMPRN 413
              |:.|.||              |.:|.             |:|.|...|..|..| .|:..|  
  Rat   296 --GMPTLPP--------------YQLPD-------------SAYPTTTVSQDGGST-VHRPQP-- 328

  Fly   414 ESPNESVSSAFGQLPPT---PNSLSAVVSGAGVTSSSGA-NSGADPSQSLANASAGSEEL---SA 471
                         |||:   ...|:|..:.|..:|:.|| :|.:..|.|..|..|.|..:   |.
  Rat   329 -------------LPPSTMHQGGLAAAAAAADSSSAYGARHSFSSYSDSFMNPGAPSNHMNPVSN 380

  Fly   472 ALKVESVDLIA------------ASQSQLYGGWSSMQALRPNA-----PLSPEDSLNSTSSTSQA 519
            .|..:.:.:::            .|.|.|:||..|..::..:.     .:.|.|||.::.|... 
  Rat   381 GLSPQVMSILSNPSAVPPQPQADFSISPLHGGLDSASSISASCSQRADSIKPGDSLPTSQSYCP- 444

  Fly   520 LDVTAHQMFHPYQHTPQYASYPAPGHAHSHHG 551
                      |...|..|:..|..|:.:|.:|
  Rat   445 ----------PTYSTTGYSVDPVAGYQYSQYG 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 102/129 (79%)
Homeobox 217..269 CDD:278475 44/51 (86%)
Pax7XP_006239325.1 PAX 34..161 CDD:128645 101/126 (80%)
Homeobox 220..274 CDD:395001 44/53 (83%)
Pax7 <354..385 CDD:403540 9/30 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2702
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 332 1.000 Inparanoid score I2342
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm9073
orthoMCL 1 0.900 - - OOG6_105365
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.870

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